PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000229742
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 358aa    MW: 39943.9 Da    PI: 9.3459
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000229742genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3104.74.8e-33106206199
                    EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                    f+k ltpsdv+k++rlv+pk++ae++    +g+  ++  l++edesg+sW+++++y+++s++yvltkGW+++vk+++L++gD+v+F++ + ++ +l
  MDP0000229742 106 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgSGD--SGLLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRYVKEKRLNAGDVVLFERRRANTDRL 199
                    99**************************86445..6779************************************************87779999* PP

                    EEEEE-S CS
             B3  93 vvkvfrk 99 
                     ++++r+
  MDP0000229742 200 SIGWRRR 206
                    *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-4196209IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-31101205IPR015300DNA-binding pseudobarrel domain
CDDcd100175.75E-31104196No hitNo description
PROSITE profilePS5086314.847106207IPR003340B3 DNA binding domain
SMARTSM010191.7E-27106207IPR003340B3 DNA binding domain
PfamPF023628.3E-30106207IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MLILTPTDKK TPSRHPHSRT HFIPQFYQDT HHHSHAHHSF QPWQLNSQDP TTPMSPTHFH  60
TPTATLNFNL NHHDAVDPNE SGQLQSPPPH HRVNSDDSDD EKEPMFEKPL TPSDVGKLNR  120
LVIPKQHAEK YFPLGSGDSG LLLSFEDESG KSWRFRYSYW NSSQSYVLTK GWSRYVKEKR  180
LNAGDVVLFE RRRANTDRLS IGWRRRNAVP AHDSGAGGVE SSSGGVGGNS SGGGGGWTRM  240
FYSAPHHGSS YPAHQYHHSV APYPPDCLHA AGSRVQNMNP TASVGNSKIL RLFGVNLECQ  300
QQAAEHLESE PSTSDGSSST LSMSSQGPTH GQRQRYPRAA YNYADQHRVR KPPKLSLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-461012093116B3 domain-containing transcription factor NGA1
5os9_B2e-461012093116B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150413e-43AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280938.10.0B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ21e-62Y2608_ARATH; B3 domain-containing protein At2g36080
SwissprotQ9FNI33e-62Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLD9ZIL20.0D9ZIL2_MALDO; ABI3L domain class transcription factor
STRINGXP_008359499.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-55B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]