PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000229889
Common NameAFL1
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LFY
Protein Properties Length: 171aa    MW: 18890.7 Da    PI: 4.4264
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000229889genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY2024e-6211691164
        FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklr........eleelfkayGvryltvakiaelGftvstLvdmkdeeldd 88 
                    mdp+afsa+lfkwd r ++  p++r+  eaav++a+ +aa aaa ++lr        +le+lf+ayGvry+t+akiaelGftv+tL+d+kd+eldd
  MDP0000229889   1 MDPDAFSANLFKWDLRGMV-VPTNRVHLEAAVPPAA-TAAGAAAGYTLRpprelglgGLEDLFQAYGVRYYTAAKIAELGFTVNTLLDLKDDELDD 94 
                    9*************99776.6778998888877776.67777788888888899999*************************************** PP

        FLO_LFY  89 lmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeet.aldalsqeglseepvqeekeaagsg 164
                    +m+sls+ifr++llvGeryGikaavraerrr+eee+  ++rr+ +s d++t aldalsqeglseepvq+eke++g+g
  MDP0000229889  95 MMSSLSQIFRWELLVGERYGIKAAVRAERRRFEEED--SRRRNPVSGDTTTnALDALSQEGLSEEPVQQEKEMVGTG 169
                    **********************************88..77777898887766*******************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016985.5E-671169IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MDPDAFSANL FKWDLRGMVV PTNRVHLEAA VPPAATAAGA AAGYTLRPPR ELGLGGLEDL  60
FQAYGVRYYT AAKIAELGFT VNTLLDLKDD ELDDMMSSLS QIFRWELLVG ERYGIKAAVR  120
AERRRFEEED SRRRNPVSGD TTTNALDALS QEGLSEEPVQ QEKEMVGTGX X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ude_A4e-28541518110GINLFY PROTEIN
4ude_B4e-28541518110GINLFY PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In developing inflorescences, leaf primordia and very young leaves.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1620280.0AB162028.1 Malus x domestica AFL1 mRNA for LEAFY protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959614.11e-118floricaula/leafy homolog
SwissprotO040642e-71FLLH_POPTR; Floricaula/leafy homolog
TrEMBLQ19A121e-116Q19A12_MALDO; LEAFY-like
TrEMBLQ5KTF11e-116Q5KTF1_MALDO; LEAFY protein
STRINGXP_008392692.13e-95(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.18e-26floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]