PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000230511

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

HD-ZIP

Protein Properties

Length: 215aa MW: 24837.1 Da PI: 6.6408

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000230511	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.1	1.8e-19	60	113	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t+eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ MDP0000230511 60 KRKLTAEQVNLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKN 113 5689************************************************95 PP
2	HD-ZIP_I/II	118.4	3.9e-38	59	150	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+l++eqv+lLE +F +e+kLe+e+K +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ ++e++rLe+e+++L+++l+e MDP0000230511 59 KKRKLTAEQVNLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKEHENTVAEKCRLESEMSKLKDQLSE 150 9****************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.1E-17	57	118	IPR001356	Homeobox domain
CDD	cd00086	5.57E-16	59	115	No hit	No description
SuperFamily	SSF46689	7.27E-18	59	123	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.293	59	114	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-16	60	113	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-20	61	121	IPR009057	Homeodomain-like
PRINTS	PR00031	1.8E-5	85	94	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	89	112	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.8E-5	94	110	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MATNNHQVVE DDHHMLLISH LYSASDVYTQ IVPPQGASKP ARRRRKKRKG GEAGGVGLKK 60 RKLTAEQVNL LELNFGNEHK LESEKKDRLA SELGLDPRQV AVWFQNRRAR WKNKKLEEEY 120 STLKKEHENT VAEKCRLESE MSKLKDQLSE AEMEIQRLLE RVDHGGPSNS PSSSFSMEAI 180 DPPFLGEFGV EEYDDVFYMP QNNYIPGMEW MNLYM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	47	RRRKKR
2	42	48	RRRKKRK
3	42	60	RRRKKRKGGEAGGVGLKKR
4	46	61	KRKGGEAGGVGLKKRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00473	DAP	Transfer from AT4G36740	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008338720.2	1e-142	homeobox-leucine zipper protein ATHB-40-like
Swissprot	O23208	6e-79	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A498KPY7	1e-158	A0A498KPY7_MALDO; Uncharacterized protein
STRING	XP_008338720.1	1e-160	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4789	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	3e-69	homeobox protein 40

Link Out ? help Back to Top
Phytozome	MDP0000230511

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]