PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000231650
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 432aa    MW: 46779.9 Da    PI: 6.5126
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000231650genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-10272320355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  MDP0000231650 272 NSHSLAERVRREKISERMRSLQELVPGC----NKITGKAVMLDEIINYVQSLQ 320
                    58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-17267336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.68E-11267324No hitNo description
PROSITE profilePS5088815.777269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-17270337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-7272320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-10275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MGGHDSEDVG FQHRNXGSLN YPSSGMNTNP LPEKVSRMAM SSVSMFKPSN GADPFFGSGW  60
DPIVSLSLSD HFGSSTGISH SEFPNPPYPI AMENQGMSST SHLVQYPSDS SYAGMMPKLP  120
PCFGSGSFTE MVGSFGVSEC GQIANSGCPP NYNPNREGGT STIGAQSHDD RQISEESALG  180
SSPNGKRRKR VPESNSAFSP NKNADGELXK DMSGESSDYL KEQDEKKAKT XENAAANLRG  240
KQMGKQTKEN SQSGDPKDSY IHVRARRGQA TNSHSLAERV RREKISERMR SLQELVPGCN  300
KITGKAVMLD EIINYVQSLQ QQVEFLSMKL ATVNPELNID IERILSKDIL NSRSGGGAVF  360
RFSPGIGSPH PYHPGMFHGN LPSMLTSAPX FPSLPQNVLD NELQGLXHMG FDSSSAIDNM  420
AQNEIGLCLK LS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.235430.0fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393688.20.0transcription factor bHLH74 isoform X1
RefseqXP_008393689.20.0transcription factor bHLH74 isoform X1
TrEMBLA0A498HQ870.0A0A498HQ87_MALDO; Uncharacterized protein
STRINGXP_008393688.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.16e-83bHLH family protein