PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000232058
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 333aa    MW: 37511.5 Da    PI: 5.7548
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000232058genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.92.3e-2738131186
       trihelix   1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rWt+qe+l+Li+++r+ e+r + +         + +p+W++vs++++++g++r+p+qC+++w+nl++++kki+e+e +r++e++s +++ ++l+
  MDP0000232058  38 RWTRQEILVLINGKRYAESRGGGRTprsdfgsgQSEPKWAAVSNYCKKHGVNREPVQCRKRWSNLAGDFKKIREWEAQRKDETESFWVMRNDLR 131
                    8*******************9954334455566**************************************************999*9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-538102IPR009057Homeodomain-like
PfamPF138372.3E-1238127No hitNo description
PROSITE profilePS500906.49338103IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MALEQQVVLS PVDGDANGAD ARHPTSGDDS SKAPRLPRWT RQEILVLING KRYAESRGGG  60
RTPRSDFGSG QSEPKWAAVS NYCKKHGVNR EPVQCRKRWS NLAGDFKKIR EWEAQRKDET  120
ESFWVMRNDL RRERKLPGFF DKEVYDIMEA VPGTPSTLAL PGPNRVESEE LKEEGMAEEA  180
ENLFDSIQRP TEDGLFLDDE SGRSPEKEVR FKEGPVXSAP LPISEKVYKP MPQGHQGQGA  240
ADPKHPASIP EFGSTSQDRK RKRCATEGDE EASDLQNQLV DVMERNSKVL ADYLHAQNSH  300
SQLDREQRKE HSDNVVAVLN KLADAFMRIA EKL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008351095.10.0trihelix transcription factor ASR3-like
SwissprotQ8VZ202e-92ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A498IFF80.0A0A498IFF8_MALDO; Uncharacterized protein
STRINGXP_008351095.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.13e-94Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]