PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000232292

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Dof

Protein Properties

Length: 539aa MW: 57355.4 Da PI: 6.1925

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000232292	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.3	3.8e-39	176	236	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG +rnvPvG+grrknk+ss MDP0000232292 176 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGIMRNVPVGAGRRKNKNSS 236 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-31	161	233	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.2E-32	178	234	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.798	180	234	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	182	218	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MSSEGEGGGG GHTIKLFGKT IPLAMAPLNR ESSSAIDEPC GSVDHDVAAT ACGGGGGGAE 60 DCSETRQKLS SSSSAATNSG EDNLEREGDA QQEEGFIHLC QVCRLTRLET KSGKELAADK 120 QDADTSDLIT EDLKAPXTSS GISENPKTPS ADRETSCKNG DQSETSSSQD KTLKKPDKIL 180 PCPRCNSMDT KFCYYNNYNV NQPRHFCKNC QRYWTAGGIM RNVPVGAGRR KNKNSSASQF 240 HHVLMSDAFQ AAHASAANGV HNATLGSNGT VLNFGSDSPL CESMASVLNL AEKNQNCMQN 300 GFRGPEQRLL VSPTAGDNGD DRSSGSSITA SNSTERGGKA NLQEPSAQKC QSFPPQVPCF 360 PGSPWPYPCN SAQWASAMPP PGFCHSGFPM AFYPAPPYWG CTVPGSWNVP CLSPSSTLSH 420 CTTSSGPNSP TLGKHSRDED IPNPSSSENE EPAKDNSSER CVWIPKTLRI DDSNEAARSS 480 AWATLGIRNE RGNCANEGGG HFKAFQSKGD EKXPAVEASR ALQSNPAAFS RSLNFHERT

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MSSEGEGGGG GHTIKLFGKT IPLAMAPLNR ESSSAIDEPC GSVDHDVAAT ACGGGGGGAE  60
DCSETRQKLS SSSSAATNSG EDNLEREGDA QQEEGFIHLC QVCRLTRLET KSGKELAADK  120
QDADTSDLIT EDLKAPXTSS GISENPKTPS ADRETSCKNG DQSETSSSQD KTLKKPDKIL  180
PCPRCNSMDT KFCYYNNYNV NQPRHFCKNC QRYWTAGGIM RNVPVGAGRR KNKNSSASQF  240
HHVLMSDAFQ AAHASAANGV HNATLGSNGT VLNFGSDSPL CESMASVLNL AEKNQNCMQN  300
GFRGPEQRLL VSPTAGDNGD DRSSGSSITA SNSTERGGKA NLQEPSAQKC QSFPPQVPCF  360
PGSPWPYPCN SAQWASAMPP PGFCHSGFPM AFYPAPPYWG CTVPGSWNVP CLSPSSTLSH  420
CTTSSGPNSP TLGKHSRDED IPNPSSSENE EPAKDNSSER CVWIPKTLRI DDSNEAARSS  480
AWATLGIRNE RGNCANEGGG HFKAFQSKGD EKXPAVEASR ALQSNPAAFS RSLNFHERT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.11639	0.0	bud\| fruit\| leaf\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008339890.2	0.0	cyclic dof factor 2-like
TrEMBL	A0A498HEN6	0.0	A0A498HEN6_MALDO; Uncharacterized protein
STRING	XP_008361785.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-96	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	MDP0000232292