PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000232355
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CO-like
Protein Properties Length: 456aa    MW: 49638.4 Da    PI: 5.8908
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000232355genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.1e-084780538
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkgHt 38
                    C++++ +++++ C d ++ lC++C  ++H++ +
  MDP0000232355 47 LCDKCNAQPAIIRCMDEKTSLCQSCDHWSHNNTS 80
                   6*****************************8844 PP
2CCT63.27.7e-22400443144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    R++a++RYkeK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ 
  MDP0000232355 400 RDKAKMRYKEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 443
                    899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.4E-7147IPR000315B-box-type zinc finger
CDDcd000212.83E-5347No hitNo description
PfamPF062031.1E-16400442IPR010402CCT domain
PROSITE profilePS5101714.981400442IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MEPLCEFCGM ATAVVYCKAD MARLCLYCDG CVHSANALSR QHPRFLLCDK CNAQPAIIRC  60
MDEKTSLCQS CDHWSHNNTS INGITTASAG GGMGGHRTHA LTCYTGCPSL SEFSRIWSVL  120
EGSSSSGGNF ESSNWDQSLG SAVVAINQDQ TNYISNNGLE GRDNNDRSFG VVVTAGKLNG  180
GSSLDQSCGR KFDPWIASSS TLIPSNPNCT PHGKDQTPFL PQESSLLKGC TNFKDLAIQD  240
SNVLCDGLNV DDVPLNFENP DGIFCPQVPS PYQFEDREMD CLLMEKSLSV TESIGPNENA  300
AQASSSGQQD RAAFQSSCGS DTVMSGMNGS ANCLLMNPTC SRSINLGFPA AQQVHPSMSL  360
TLSSISRESN PDYQDCELSP VFLTGEPWES TLEASSPQAR DKAKMRYKEK KKTRTFGKQI  420
RYASRKARAD TRKRVKGRFV KAGEEYDYDP LVTRSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008379603.10.0zinc finger protein CONSTANS-LIKE 12
TrEMBLA0A498J5F30.0A0A498J5F3_MALDO; Uncharacterized protein
STRINGXP_008379603.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70521923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-79B-box type zinc finger protein with CCT domain