PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000233283
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 532aa    MW: 58756.6 Da    PI: 8.3723
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000233283genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.4e-0687109123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k F r  nL+ H r H
  MDP0000233283  87 FVCEICNKGFQREQNLQLHRRGH 109
                    89*******************88 PP
2zf-C2H212.50.00046163185123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k++  +s+ k H +++
  MDP0000233283 163 WKCEKCSKRYAVQSDWKAHSKVC 185
                    58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-586109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.65E-886109No hitNo description
PfamPF121712.9E-587109IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.07487109IPR007087Zinc finger, C2H2
SMARTSM003550.003487109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SMARTSM00355170128158IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-4151183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.65E-8158183No hitNo description
SMARTSM00355130163183IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MNKGLMVDEN MSNLTCASGD LSASNSSIRN ESSSAGTVYP HPASSAQIQQ QQAPPPPKKK  60
RNLPGNPDPD AEVIALSPKS LMATNRFVCE ICNKGFQREQ NLQLHRRGHN LPWKLKQRTG  120
KEVRKKVYLC PEPTCVHHEP SRALGDLTGI KKHFSRKHGE KKWKCEKCSK RYAVQSDWKA  180
HSKVCGTREY RCDCGTLFSR RDSFITHRAF CDALAQENNT SSAAARSVMP ASINPLLSSL  240
PQLHSHGLQV QSAVKREQDQ HQQQLLPPWL SFLPEGGEAA SLPTMNLSAS PLFSTSSFQQ  300
YYSFDQNPNP SSSSTALLPD NFQLQQNTAS PHMSATALLQ KASEMGATIS KTSPSPYFXK  360
PPTHQSYLAH QAHMSNETSR DQAILLDDGF GNNESKSSLF HDMMMMSSSH GFGHDHHQVS  420
SSSFGDHQQQ QQQAFNGIMV DGNFVEINNN NPPNNYNKPR STDNNNNNEG LTRDFLGLRA  480
PFSSAAASHG GHGDLFSIDM AGLDHXHHVS TSSPAAYNNG QQNDQNQKSW QG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-32159223367Zinc finger protein JACKDAW
5b3h_F2e-32159223367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113125KLKQRTGKEVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.232540.0bud
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008360953.20.0protein indeterminate-domain 7-like
TrEMBLA0A498HND70.0A0A498HND7_MALDO; Uncharacterized protein
STRINGXP_008360953.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-110indeterminate(ID)-domain 7