PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000233614
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 186aa    MW: 20412.3 Da    PI: 10.8846
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000233614genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.13.8e-155711571128
            NAM  71 gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++r nrat++g+ k tgk+ e+ ++ +++++g k++ +fy+gr pk++ktdWv+hey l
  MDP0000233614  57 STRCNRATDQGFYKITGKKCEIRAEeSKAVIGKKRIXTFYEGRVPKAKKTDWVVHEYYL 115
                    6899*******************98566679**************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.0231135IPR003441NAC domain
SuperFamilySSF1019412.75E-1358117IPR003441NAC domain
PfamPF023651.9E-560114IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MLLLSTGGAA QVVLWSTTRL NNSKRSCMFR SFSNLQLKTT TFLKKALIVK LSCSNISTRC  60
NRATDQGFYK ITGKKCEIRA EESKAVIGKK RIXTFYEGRV PKAKKTDWVV HEYYLTKIEV  120
GSRSTKQTTS RTGMSSASSS AAPTSEKEPT PPTSATSSAS LTSPPAILST TSWLPPAPSL  180
FSLWRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.140825e-96fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF9687651e-124HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008343469.21e-39protein NTM1-like 9
TrEMBLA0A498KJL73e-92A0A498KJL7_MALDO; Uncharacterized protein
STRINGXP_008349070.12e-46(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13710524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15170.13e-14NAC family protein