PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000233926

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

M-type_MADS

Protein Properties

Length: 135aa MW: 15248.3 Da PI: 9.8184

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000233926	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61.1	1.3e-19	21	62	4	45
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 n qvtfskRr g++KKA+E ++LC++e+ +i+fs+ +k MDP0000233926 21 PKRNNLQVTFSKRRSGLFKKASEXCTLCGVEIVIIVFSPANK 62 566789*********************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.6E-27	10	69	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	21.866	10	70	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-22	11	79	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-16	12	32	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.9E-22	19	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-16	32	47	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-16	47	68	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MVMKIKKPSQ GRQKIAIAKI PKRNNLQVTF SKRRSGLFKK ASEXCTLCGV EIVIIVFSPA 60 NKPFSFGHPE CWWERLVDEL AFHELQILXA SMEELKKNVT KQANWILMES SAAAAAANCS 120 SSSPFFQKEQ WCCST

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in the final stages of embryo sac development. {ECO:0000269\|PubMed:18713950}.
Uniprot	TISSUE SPECIFICITY: Expressed exclusively in the central cell of the female gametophyte and in early endosperm. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028964768.1	1e-41	agamous-like MADS-box protein AGL62
Swissprot	Q4PSU4	2e-25	AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBL	A0A1L5YEJ2	1e-38	A0A1L5YEJ2_PRUPE; MADS-box protein 21
STRING	XP_009335378.1	1e-39	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	1e-27	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	MDP0000233926

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]