PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000233948
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 28938.8 Da    PI: 8.0577
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000233948genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.63.2e-28959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   k+i+n + rqvtfskRr g+lKKAeELSvLCda++a+iifsstgkl+ey+s
  MDP0000233948  9 KKIDNATARQVTFSKRRRGLLKKAEELSVLCDADIALIIFSSTGKLFEYAS 59
                   68***********************************************86 PP
2K-box50.96.7e-1812220319100
          K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++++L kei    +++R++ Ge+++ L+l+eLqqLe+ Le++l ++ +kK+e ++++i +lq+   +l een++Lr++++e
  MDP0000233948 122 SNYTRLSKEIAAKSHQLRQMRGEEIQGLNLEELQQLEKSLETGLGRVIEKKSEKIMKEIGDLQRNGMQLMEENERLRQQVAE 203
                    67999*******9******************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.1E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.431161IPR002100Transcription factor, MADS-box
CDDcd002652.60E-34260No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-28323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-27363IPR002100Transcription factor, MADS-box
PfamPF003199.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.717117207IPR002487Transcription factor, K-box
PfamPF014865.4E-17122201IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAREKIQIKK IDNATARQVT FSKRRRGLLK KAEELSVLCD ADIALIIFSS TGKLFEYASS  60
RKLSFMKFEP GPPSTRRLDT IRASSTSTIF DMKEILERHN LHSKNLEKLE QPSLQLQLVE  120
NSNYTRLSKE IAAKSHQLRQ MRGEEIQGLN LEELQQLEKS LETGLGRVIE KKSEKIMKEI  180
GDLQRNGMQL MEENERLRQQ VAEKSDGRRL VQVDSENMFT EEGQSSESVT NPCNSNNGPQ  240
DYDSSDTSLK LGCV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-20160160MEF2C
5f28_B5e-20160160MEF2C
5f28_C5e-20160160MEF2C
5f28_D5e-20160160MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.135150.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0047280.0LC004728.1 Malus domestica MdJa1 mRNA for JOINTLESS like protein MdJOINTLESSa, complete cds.
GenBankLC0047290.0LC004729.1 Malus domestica MdJa2 mRNA for JOINTLESS like protein MdJOINTLESSa, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280915.11e-154MADS-box protein JOINTLESS
SwissprotQ9FUY61e-108JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLQ208U71e-153Q208U7_MALDO; JOINTLESS
STRINGXP_008385672.11e-154(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]