PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000234073
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 192aa    MW: 22325.9 Da    PI: 11.1508
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000234073genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.11.3e-2461111151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                    +rien + rqvtf+kR +g++KK +ELSvLCda++ ++ifsstgk++ y+s
  MDP0000234073  61 SRIENRTTRQVTFAKRXAGLIKKTHELSVLCDAQIGLVIFSSTGKMFQYCS 111
                    59***********************************************96 PP
2K-box46.91.2e-16130192869
          K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                    +  +++++e+++ el+k+++e++ L+ ++ ++ GedL    + +L +Le+qLe+s++++R++K
  MDP0000234073 130 RvPQHNDTEYMNAELRKMRRETQHLELSLQRYTGEDLRCVRFDDLVELEHQLEESVNRVRARK 192
                    44678899******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-3553112IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.00253113IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-2854134IPR002100Transcription factor, MADS-box
CDDcd002658.79E-3654128No hitNo description
PRINTSPR004044.1E-265575IPR002100Transcription factor, MADS-box
PfamPF003192.0E-2262109IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-267590IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-2690111IPR002100Transcription factor, MADS-box
PfamPF014861.9E-13133192IPR002487Transcription factor, K-box
PROSITE profilePS5129710.767137192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MRGRGEGGGR GQVRREXRRR IRGRRNLSTG GVRVPSISSS FSYKLKKKTY INMGRGKITI  60
SRIENRTTRQ VTFAKRXAGL IKKTHELSVL CDAQIGLVIF SSTGKMFQYC SESSSMEELI  120
XRYQVTKGIR VPQHNDTEYM NAELRKMRRE TQHLELSLQR YTGEDLRCVR FDDLVELEHQ  180
LEESVNRVRA RK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-2053123169MEF2C
5f28_B2e-2053123169MEF2C
5f28_C2e-2053123169MEF2C
5f28_D2e-2053123169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028958765.12e-96MADS-box protein FBP24-like
SwissprotQ9ATE53e-55FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A498JUU11e-94A0A498JUU1_MALDO; Uncharacterized protein
STRINGXP_008346100.19e-96(Malus domestica)
STRINGXP_008372113.14e-93(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.35e-49MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]