PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000234807
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 321aa    MW: 35405.7 Da    PI: 10.5639
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000234807genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.6e-112272146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+e l+ +v ++G g W+tI            R+  ++k++w++
    MDP0000234807 22 KQKWTSEEEEALKAGVLKHGAGKWRTILTDPEfntilHLRSNVDLKDKWRN 72
                     79***********************************88**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.2211778IPR017930Myb domain
SuperFamilySSF466895.46E-151984IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-132173IPR009057Homeodomain-like
SMARTSM007177.8E-62176IPR001005SANT/Myb domain
PfamPF002491.3E-72272IPR001005SANT/Myb domain
CDDcd116606.42E-172374No hitNo description
SMARTSM005265.4E-15137204IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.951138209IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467855.99E-17139214IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.0E-15143213IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.9E-10146202IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MKLSWQISFW KGSGFRLMGA PKQKWTSEEE EALKAGVLKH GAGKWRTILT DPEFNTILHL  60
RSNVDLKDKW RNINVTAIWG SRQKAKLALK RNLPTPKHEN NNNPLAVSTI IQSHKEVVDA  120
KPLAISGGKS QTTESKDSKH PISRLDHLIL EAITNLKEPG GSDRAAIVMY IEEQYWAPPN  180
LKKLLSSKLK HMTTNRKLVK VKHRYRIPAT SEKRRSSSAL LPDGKQKDSS RTDKSDVNIL  240
TKSQVDADLT KMRSMTAQEA AAAAAQAVAE AEAAIAAAEE AAREAEAAEA EAEAAQVFAK  300
AAMKALKCRK LGKVLLSNFT S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.120250.0bud| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00597DAPTransfer from AT5G67580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744770.0DQ074477.1 Malus x domestica MYBR6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028963643.10.0telomere repeat-binding factor 2 isoform X1
RefseqXP_028963644.10.0telomere repeat-binding factor 2 isoform X1
SwissprotQ9FJW57e-80TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A498KH780.0A0A498KH78_MALDO; Uncharacterized protein
STRINGXP_008341201.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-73telomere repeat binding factor 1
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]