PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000236349
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 227aa    MW: 25702.8 Da    PI: 4.7087
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000236349genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.83.8e-31341661128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkev 92 
                    lp G+rF+Pt +e++v+yL +k+ ++ +++ + ikevd+y+++P++Lp+   +++a+ +  y+F++r+   a++ +  + at+ gyWk    ++ev
  MDP0000236349  34 LPLGYRFDPTGDEILVYYLFNKIMDRAMPTYDLIKEVDVYECHPNQLPNgdfRHTADFNAAYYFANREPFDAREGKIIKtATDGGYWKVIDDEEEV 129
                    699*********************************************5455555566688*******9999866666659**************9 PP

            NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    l k ++  vg  +++ fykg+ap+g+kt  vm+eyrl
  MDP0000236349 130 LFKdSDVIVGFETVMKFYKGQAPNGTKTPFVMNEYRL 166
                    998466679**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-3431195IPR003441NAC domain
PROSITE profilePS5100535.44134195IPR003441NAC domain
PfamPF023655.2E-1535166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MASSASQSAD ENEGFDLLKC STVQEGKKDA EIRLPLGYRF DPTGDEILVY YLFNKIMDRA  60
MPTYDLIKEV DVYECHPNQL PNGDFRHTAD FNAAYYFANR EPFDAREGKI IKTATDGGYW  120
KVIDDEEEVL FKDSDVIVGF ETVMKFYKGQ APNGTKTPFV MNEYRLNPRV VPAHVLNESI  180
KTKIERYVVC RIINKEVSNQ PAIDYGQGLL XLLQKSSAGT VEDGVPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-20232006170NO APICAL MERISTEM PROTEIN
1ut4_B6e-20232006170NO APICAL MERISTEM PROTEIN
1ut7_A6e-20232006170NO APICAL MERISTEM PROTEIN
1ut7_B6e-20232006170NO APICAL MERISTEM PROTEIN
4dul_A6e-20232006170NAC domain-containing protein 19
4dul_B6e-20232006170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981260.0KF198126.1 Malus hupehensis NAC domain protein (NAC119) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008361771.21e-166NAC transcription factor 29-like
RefseqXP_028951963.11e-166NAC transcription factor 29-like
TrEMBLA0A498HJB71e-168A0A498HJB7_MALDO; Uncharacterized protein
STRINGXP_008361771.11e-169(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15772611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-25NAC domain containing protein 38