PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000236575

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB_related

Protein Properties

Length: 128aa MW: 13602.9 Da PI: 9.2016

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000236575	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.7	2.6e-13	49	95	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+WT+eEdellv+++k+ G g+W+ ++t g+ ++k+c +rw + MDP0000236575 49 RGPWTPEEDELLVNYIKKEGEGRWRILPKTAGLLCCGKSCCLRWINC 95 89****************************889*******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.3E-17	40	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.04E-13	43	105	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.986	44	100	IPR017930	Myb domain
SMART	SM00717	1.1E-4	48	98	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-10	49	95	IPR001005	SANT/Myb domain
CDD	cd00167	1.72E-7	51	94	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MSNPSSSSKA AAASVKMQMM ITTSSSLSKA AGVAGGTKTP CCANVGLKRG PWTPEEDELL 60 VNYIKKEGEG RWRILPKTAG LLCCGKSCCL RWINCLRLFN KRGPLGPPDP ADLSPTLPPS 120 LSSDFSFL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Siliques. {ECO:0000269\|PubMed:9839469}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ020112	1e-111	KJ020112.1 Malus hybrid cultivar MYB12a protein (MYB12a) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001315719.1	7e-44	transcription repressor MYB5-like
Swissprot	Q38850	4e-28	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	S5FZE3	2e-42	S5FZE3_MALDO; MYB transcription factor
STRING	XP_008366136.1	2e-42	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	3e-29	myb domain protein 17

Link Out ? help Back to Top
Phytozome	MDP0000236575

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]