PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000236605
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 182aa    MW: 20252.3 Da    PI: 10.4322
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000236605genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.62.3e-214696155
            AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   ++++GVr ++ +gr++AeIrd ++    ++r +lg+++taeeAa+a+++a+++l+g
  MDP0000236605 46 PHFRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTYDTAEEAARAYDEAALSLRG 96
                   689*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-144696IPR001471AP2/ERF domain
CDDcd000181.30E-3046103No hitNo description
SuperFamilySSF541719.81E-2247104IPR016177DNA-binding domain
SMARTSM003801.3E-3447110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-3147104IPR001471AP2/ERF domain
PROSITE profilePS5103222.61647104IPR001471AP2/ERF domain
PRINTSPR003674.8E-104859IPR001471AP2/ERF domain
PRINTSPR003674.8E-107086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSTVDALHLR DTTLSLAVEP PSPPPRKLRA QPKHASPGKG GGGKDPHFRG VRKRPWGRFA  60
AEIRDPWKKT RKWLGTYDTA EEAARAYDEA ALSLRGSKAK TNFGNLALAP PHSLLVGGGY  120
EMFWPPPRMY FMTSAPAVAP VRSEYTGYKL ENVDVVVGEE EKKMRKEKKP LLFDLNLPAP  180
LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2138119580Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346165.21e-129LOW QUALITY PROTEIN: ethylene-responsive transcription factor 8-like
SwissprotQ9FE675e-29ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A498JX371e-129A0A498JX37_MALDO; Uncharacterized protein
STRINGXP_008346165.11e-130(Malus domestica)
STRINGXP_008372324.11e-130(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-19erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]