PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000236656

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Protein Properties

Length: 205aa MW: 22852.4 Da PI: 10.5088

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000236656	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61.2	1.8e-19	121	200	1	86
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k l++s+v + ++ lp f+++h + +++t+tledesgr++++k+i +k++ l++GW++F+ +++L egD++vF+l++ MDP0000236656 121 FVKSLVRSHVASCFWMGLPSLFCKSHLPD--KDITMTLEDESGRQYQLKYIACKTG----LSAGWRQFAASHNLLEGDVLVFQLVE 200 89**********************644..678************777776....*********************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.4E-19	113	204	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.65E-21	116	204	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.20E-26	119	205	No hit	No description
SMART	SM01019	3.3E-17	121	205	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-16	121	200	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.83	121	205	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MARKVDGKPQ TPPSKPRLRP KPAANPKPSS LPTAKVKKPG KPNEKEVEHS MPMKELSNTQ 60 ITKFPHKHIV ALIDQKVDGS SGNTQYEFPV DGSPSRGQAK SSAVIRAQEV RSKLERQFPS 120 FVKSLVRSHV ASCFWMGLPS LFCKSHLPDK DITMTLEDES GRQYQLKYIA CKTGLSAGWR 180 QFAASHNLLE GDVLVFQLVE LTKFK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.15352	7e-37	fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008339962.2	1e-129	B3 domain-containing protein Os01g0234100-like
Swissprot	Q5KQI4	8e-35	Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBL	A0A498KFP0	1e-114	A0A498KFP0_MALDO; Uncharacterized protein
STRING	XP_008339962.1	1e-129	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1007	33	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-34	B3 family protein

Link Out ? help Back to Top
Phytozome	MDP0000236656

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]