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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
MDP0000236732 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 402aa MW: 44827.4 Da PI: 9.9131 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MDP0000236732 | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 352.5 | 9e-108 | 1 | 310 | 1 | 300 |
GAGA_bind 1 mdddgsre..rnkg.yye...............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77
mdd ++e r+k yy+ ++ ++l +++++ms+iaerda+irern+al+ek++a+a+rd+a+ qrd+ala+r+ a++er
MDP0000236732 1 MDDGRQHEngRHKMdYYRggtaspwnmmaqqqaKEpNALV--MNKKIMSIIAERDAAIRERNAALAEKNEALAARDEALRQRDEALAQRDSAMMER 94
6776665558999889999999999999987653345666..99**************************************************** PP
GAGA_bind 78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkkse 172
dn+++al ++n+ + p g ++ + +k ++ + + l+d + +++++++ea+p++ +e +++++k +ak++k+++ak + kk +e
MDP0000236732 95 DNAYAALHSRDNA--VNFPLGGGAPRAAKRMHRPSN-HSVTLDDVHYSTKDMHITEAYPVSVISTEDVKSRQTK---QAKENKASRAKqSRKKVGE 184
*********9998..567889999999999997777.7799*******************99888888887777...4444444444414445566 PP
GAGA_bind 173 kskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkkl 268
+ +++ ++++ + k+e+++ dl+ln v++Dest+PvPvCsCtG++rqCYkWGnGGWqS+CCtt +S+yPLP+++++r+aR++grKmS+++f++l
MDP0000236732 185 DLNRQASSDG--IKYKSEWDTHDLGLNLVTFDESTMPVPVCSCTGIPRQCYKWGNGGWQSSCCTTHMSMYPLPQMPNKRHARMGGRKMSGSVFTRL 278
7777766666..57********************************************************************************** PP
GAGA_bind 269 LekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
L++Laa+G+dls p+DLk++W +HGtn+++ti
MDP0000236732 279 LSRLAADGHDLSMPLDLKEYWSRHGTNRYITI 310
*******************************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 402 aa
Download sequence Send
to blast |
MDDGRQHENG RHKMDYYRGG TASPWNMMAQ QQAKEPNALV MNKKIMSIIA ERDAAIRERN 60
AALAEKNEAL AARDEALRQR DEALAQRDSA MMERDNAYAA LHSRDNAVNF PLGGGAPRAA 120
KRMHRPSNHS VTLDDVHYST KDMHITEAYP VSVISTEDVK SRQTKQAKEN KASRAKQSRK 180
KVGEDLNRQA SSDGIKYKSE WDTHDLGLNL VTFDESTMPV PVCSCTGIPR QCYKWGNGGW 240
QSSCCTTHMS MYPLPQMPNK RHARMGGRKM SGSVFTRLLS RLAADGHDLS MPLDLKEYWS 300
RHGTNRYITI NATRAAGLQF LLSSVVRGAF GLLGTVSSFD ESLKEWLXKI LEEKKAGNQL 360
PSHVKEPKRN RWVAPSDGWF KLNNIDGATK MAEGFGGAGG VL
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
