PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000236750
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 1007aa    MW: 115072 Da    PI: 8.758
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000236750genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.11.2e-115611934100
                    SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-SS CS
             B3  34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrks 100
                      ++l+ ++g++W + l  + ++g+++l kGW++F++   L+ g  ++F+++g+ s f  +v++f++s
  MDP0000236750  56 DNVVLKVPNGEKWPIGL--TSRDGKVWLNKGWSKFAEFYSLDHGNLLIFSFEGDhSHF--HVRIFSRS 119
                    4699*************..9999*****************************988888..*****985 PP
2B353.54.2e-174435351100
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffk+  p+ +++   l++p kf++++g++   s  + l+ +sg +We+++  r + g +++ kGW eF +   L+ gD++vF+++g+s+f  +v +
  MDP0000236750 443 FFKII-PNEASRYTKLRIPEKFVNKYGEN--ISNPILLKLPSGVEWEIQV--RTCNGDIWFDKGWPEFSEFYSLDYGDSLVFRYEGNSKF--HVCI 531
                    66655.888888889***********977..6667***************..999999****************************9999..**** PP

                    E-SS CS
             B3  97 frks 100
                    f++s
  MDP0000236750 532 FDRS 535
                    *985 PP
3B350.44.1e-16629710287
                    EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                    fkv +++++  ++ l+lp +fa++h ++++++s   +l  ++g +W+vk++y ++ +r++   GW  Fv +n+L++gD++vF l+++
  MDP0000236750 629 FKVVMQPSYIFHN-LILPSEFAKRHlMQQPTGS--AILCVPDGGTWRVKFTYANQISRFL--CGWLAFVGDNDLRVGDVCVFILIKD 710
                    5777888888887.***********76666665..899999*********9999988865..69******************99876 PP
4B338.91.5e-127938641486
                    T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
             B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                    +++ +p +fa++ +++k++   +       + W v++i   + +s++  +++GW+ F+++n+L+egD+++F+l++
  MDP0000236750 793 KLMHVPAEFAKRLKLQKKQ---IAALRVGEQLWPVNIIGynNEGSRHSHISGGWRVFAEENRLREGDVCTFELVE 864
                    56899*****999998654...99999999*******776555555578999********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.84325119IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-1627119IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-828119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-1538120IPR015300DNA-binding pseudobarrel domain
CDDcd100172.98E-1341117No hitNo description
PfamPF023621.1E-843118IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-14168264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-13168264IPR015300DNA-binding pseudobarrel domain
CDDcd100176.36E-13169262No hitNo description
PROSITE profilePS508639.46170264IPR003340B3 DNA binding domain
SMARTSM010190.0046171264IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-6338398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-5339397IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-23436535IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-22437535IPR015300DNA-binding pseudobarrel domain
CDDcd100174.36E-17441533No hitNo description
PROSITE profilePS5086314.522442535IPR003340B3 DNA binding domain
SMARTSM010195.2E-18443535IPR003340B3 DNA binding domain
PfamPF023623.2E-14443534IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-21622721IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-21622721IPR015300DNA-binding pseudobarrel domain
CDDcd100171.92E-20627721No hitNo description
SMARTSM010197.1E-12629723IPR003340B3 DNA binding domain
PfamPF023621.5E-13629717IPR003340B3 DNA binding domain
PROSITE profilePS5086311.815642723IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-16779873IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.475780876IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-13780876IPR015300DNA-binding pseudobarrel domain
CDDcd100173.08E-11782866No hitNo description
SMARTSM010197.8E-13784876IPR003340B3 DNA binding domain
PfamPF023622.0E-10793864IPR003340B3 DNA binding domain
SuperFamilySSF813831.1E-109541004IPR001810F-box domain
Gene3DG3DSA:1.20.1280.506.8E-119541003No hitNo description
PROSITE profilePS501818.5979561002IPR001810F-box domain
PfamPF006463.9E-79591003IPR001810F-box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1007 aa     Download sequence    Send to blast
MPMSSPNHNV PSLIYVTCSL DIVDNYRYMV ILLRASYPLQ RLPESAVVVY GDYLGDNVVL  60
KVPNGEKWPI GLTSRDGKVW LNKGWSKFAE FYSLDHGNLL IFSFEGDHSH FHVRIFSRSC  120
LEKDFGSFFN VEDNLSGETD NVGSSESPLM GSCSKRNGKG PAFPLNAPPS FFKVVLDDTL  180
RDGXIKIPPI GSMKYEDFIG DKMFLEVPNG LVWPVELSRR DCEIWLRRGW LKFARFYFLE  240
LGCLLLFTYK GVYSHFQVRI FRRNTLEMDY FNLSDEDETD SNSSGEIECQ RMKHDKERRT  300
HGGDGGMSAA HRSPKVLSRT AQSELEDKTE RAFAKARSFK SRNPFVVIRM RPSYISTHLK  360
LPIYFAQEHI CESGERKVTL KISDMRSWSV KCIIQNHSAM CPAAAITLLF VEFSATLELP  420
AMASLLPETD RARPTFSATT PHFFKIIPNE ASRYTKLRIP EKFVNKYGEN ISNPILLKLP  480
SGVEWEIQVR TCNGDIWFDK GWPEFSEFYS LDYGDSLVFR YEGNSKFHVC IFDRSATEIE  540
YPLPFPEVEE SDEDDDESFK VLEDFPPCPR TRQKSPLPCP LPRMKKRIST SSSKKFGNKS  600
SSRRHPLTKN EKSIALQRCI DFKSEKPHFK VVMQPSYIFH NLILPSEFAK RHLMQQPTGS  660
AILCVPDGGT WRVKFTYANQ ISRFLCGWLA FVGDNDLRVG DVCVFILIKD IPLSFEVVFY  720
RGKCKMGKIN GRHVSQRPCT SSLSASEVAN MSKISNQVTQ RPSCLKASRV LEAANKFITK  780
NPFFRATVRP PSKLMHVPAE FAKRLKLQKK QIAALRVGEQ LWPVNIIGYN NEGSRHSHIS  840
GGWRVFAEEN RLREGDVCTF ELVEINDIVL KVIQFGLWVF QLPTKSSQNY FKISDCKRSI  900
GRFGLVGCNR SMKRASLGDD SMAAASSTDV KMKRIKVEEE EEKMVIDCVD QDKLKRAGFS  960
NLDDNLIFEV FKHVDTRTLG MASCVSKQWH KMAEYERLWE LICPGTS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.68221e-168bud| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017183067.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A498KNH50.0A0A498KNH5_MALDO; Uncharacterized protein
STRINGXP_008354683.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-32B3 family protein