PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000236994
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CPP
Protein Properties Length: 594aa    MW: 65382.3 Da    PI: 8.4453
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000236994genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.82.5e-14131169241
            TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                    ++k+CnCk+s+Clk+YCeCfaag +C+  C+C++C+N+ +
  MDP0000236994 131 KQKQCNCKNSRCLKLYCECFAAGIYCDG-CNCSNCHNNVN 169
                    89**************************.********986 PP
2TCR50.93.1e-16215254140
            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  MDP0000236994 215 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 254
                    589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.1E-17130170IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.903131255IPR005172CRC domain
PfamPF036381.3E-11132167IPR005172CRC domain
SMARTSM011148.4E-20215256IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12218253IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MEQSETVSEV APKKLARQLD FTTVYRASAS AALTDVQLQL QTPSQAQQQP QISPARPQLH  60
LHLQSPQPAA VQLSKQLTPP PAIPQFQARR SPAPPANVRI PHPVHKLSQV RKQDSPVSRQ  120
RGDEKDCTPK KQKQCNCKNS RCLKLYCECF AAGIYCDGCN CSNCHNNVNN EAARQDARGA  180
ILERNPNAFQ PKIASSPQES RDGREDVXXI QAAGKHNKGC HCKKSGCLKK YCECFQANIL  240
CSENCKCMDC KNFEGSEERR ALYHEGHNTA AYMQQANAAI SGAIGTSGYG TPLVSRKRKG  300
YELYFTTGNQ STHPIXQPQQ ENHLRPHMAS SSQLSVPIFR ADAAVPRPSK TTIYRSPLAD  360
IIQPKNVKDL CSRLVVVAGA AAKALAGDMQ RETINTSTTS STQEXEEHKM EHDKQHDXQL  420
GVNEADREVS TFSGSNGVDV QNSRPMSPVT LALMCDEQDK MFMEAGLPKG AGTDNPSMPE  480
KPTQEIGFTE IYXEQERLVL TGFRDFLNHL ITRGSIKETM CSPQAKTERL SQKESVQVGT  540
AKPNTEPRYQ KEVYINGIVK SPLSSANGKI LQSATTVTSG DNDLTLKVGL PIEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-2913226411132Protein lin-54 homolog
5fd3_B7e-2913226411132Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.303420.0bud| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4840289e-45AM484028.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X101832.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008378097.20.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A498J8320.0A0A498J832_MALDO; Uncharacterized protein
STRINGXP_008378097.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-116Tesmin/TSO1-like CXC domain-containing protein