PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000237846
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 209aa    MW: 23466.3 Da    PI: 4.6122
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000237846genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.43e-1495181395
                    EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
             B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     +  +++v  s ++v+p kf  +    + +s   t+ +  g+ We+++  +++s +  +  +W+eFv++n+Lk+gD +vF+l++ s+++l ++
  MDP0000237846  95 VIIRKANVKPSYQMVIPAKFQPTL---PSCS-IPTVLTFGGKNWEMTY--TGGSIQRKFDINWREFVNDNNLKVGDACVFELQECSSTKLAFR 181
                    555667777888999999997555...3344.4577889*********..999999999999*******************975466655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-1588186IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-1688182IPR015300DNA-binding pseudobarrel domain
CDDcd100172.02E-1791186No hitNo description
PfamPF023624.9E-1293181IPR003340B3 DNA binding domain
PROSITE profilePS5086311.98493188IPR003340B3 DNA binding domain
SMARTSM010190.001193188IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MNAPQXLASD GDPWLFSDGL IPPHFFXMVA DVDXXVVEVK IILDIHMFLA SLVXTVAKVE  60
DPQMGDQRHX PXSNPTIELQ GDEFWPLSKK PFFEVIIRKA NVKPSYQMVI PAKFQPTLPS  120
CSIPTVLTFG GKNWEMTYTG GSIQRKFDIN WREFVNDNNL KVGDACVFEL QECSSTKLAF  180
RVQILRGDIP SELLGNLKGD IVDAPIIID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028961285.11e-107B3 domain-containing protein Os04g0386900-like isoform X1
TrEMBLA0A498JBT71e-142A0A498JBT7_MALDO; Uncharacterized protein
STRINGXP_008345126.14e-84(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-07B3 family protein