PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000238035

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 505aa MW: 55959.5 Da PI: 5.6081

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000238035	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116	3.8e-36	143	253	19	129
NAM 19 LkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgr 112 k+kv gk+l+ ++++evdi+k+ PwdLp k + ++++ +wyfF+++++ky+tg r++r+t++gyWkatg+d++vl +ge+ g ktL+f++gr MDP0000238035 143 RKRKVMGKRLPY-NFVAEVDIHKYAPWDLPeKsSWQSGDLKWYFFCPTERKYPTGARAKRTTERGYWKATGNDRSVLY-NGEVAGKIKTLIFHTGR 236 5899***999.89**********95345666778**********************************.999********** PP NAM 113 apkgektdWvmheyrle 129 apkge+tdWvmheyrle MDP0000238035 237 APKGERTDWVMHEYRLE 253 *************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56053	2.42E-24	5	88	IPR020040	Ribosomal protein L6, alpha-beta domain
Gene3D	G3DSA:3.90.930.12	9.2E-26	7	87	IPR020040	Ribosomal protein L6, alpha-beta domain
Pfam	PF00347	1.4E-14	12	86	IPR020040	Ribosomal protein L6, alpha-beta domain
PRINTS	PR00059	2.7E-12	23	39	IPR019906	Ribosomal protein L6, bacterial-type
PRINTS	PR00059	2.7E-12	65	86	IPR019906	Ribosomal protein L6, bacterial-type
PROSITE pattern	PS00525	0	78	86	IPR002358	Ribosomal protein L6, conserved site
PROSITE profile	PS51005	42.408	123	275	IPR003441	NAC domain
SuperFamily	SSF101941	3.79E-45	143	275	IPR003441	NAC domain
Pfam	PF02365	1.0E-12	146	252	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006412	Biological Process	translation
GO:0005634	Cellular Component	nucleus
GO:0005840	Cellular Component	ribosome
GO:0003677	Molecular Function	DNA binding
GO:0003735	Molecular Function	structural constituent of ribosome
GO:0019843	Molecular Function	rRNA binding

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MEAKFFRFLK IVGVGYKARA EAEGRMLYLK LGYSHEVELT VPPAVRVFCF KNNVVCCTGI 60 DKDRVHQFAA AVRSCKPPEV YKGKGIIEFK PLNPINPDHG EQVPLNSPEA ALSSSLRFHS 120 CPPIPAIDAA PPIPSAVANF PHRKRKVMGK RLPYNFVAEV DIHKYAPWDL PEKSSWQSGD 180 LKWYFFCPTE RKYPTGARAK RTTERGYWKA TGNDRSVLYN GEVAGKIKTL IFHTGRAPKG 240 ERTDWVMHEY RLESKDLANR GVPQESYVLC TIFQKEGPGP KNGAQYGAPL MEEDWSDDEA 300 ENCSEAVXHA NMPEPNLVLP SNYNSSITTS TYSXESIHIR XSSESCISDX VPLSCHVPQL 360 VSSNHATVEE PHTSNDDDIL SILACFSEES PSLIKENEKN EELGNVVPIG NASATPHVVS 420 NDIYVTLGDL GKVARVGEDG CSFSSLPNSV CATGQMPRGD DGQYLELDDL GELFNYXDST 480 HTRPPSMFGE PQTLLGEMPF QGETX

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MEAKFFRFLK IVGVGYKARA EAEGRMLYLK LGYSHEVELT VPPAVRVFCF KNNVVCCTGI  60
DKDRVHQFAA AVRSCKPPEV YKGKGIIEFK PLNPINPDHG EQVPLNSPEA ALSSSLRFHS  120
CPPIPAIDAA PPIPSAVANF PHRKRKVMGK RLPYNFVAEV DIHKYAPWDL PEKSSWQSGD  180
LKWYFFCPTE RKYPTGARAK RTTERGYWKA TGNDRSVLYN GEVAGKIKTL IFHTGRAPKG  240
ERTDWVMHEY RLESKDLANR GVPQESYVLC TIFQKEGPGP KNGAQYGAPL MEEDWSDDEA  300
ENCSEAVXHA NMPEPNLVLP SNYNSSITTS TYSXESIHIR XSSESCISDX VPLSCHVPQL  360
VSSNHATVEE PHTSNDDDIL SILACFSEES PSLIKENEKN EELGNVVPIG NASATPHVVS  420
NDIYVTLGDL GKVARVGEDG CSFSSLPNSV CATGQMPRGD DGQYLELDDL GELFNYXDST  480
HTRPPSMFGE PQTLLGEMPF QGETX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-33	145	281	37	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-33	145	281	37	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-33	145	281	37	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-33	145	281	37	171	NO APICAL MERISTEM PROTEIN
3ulx_A	1e-33	145	276	35	169	Stress-induced transcription factor NAC1
4dul_A	1e-33	145	281	37	171	NAC domain-containing protein 19
4dul_B	1e-33	145	281	37	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008381837.2	0.0	NAC domain-containing protein 82-like isoform X1
Refseq	XP_008381838.2	0.0	NAC domain-containing protein 82-like isoform X1
Refseq	XP_017190291.2	0.0	NAC domain-containing protein 82-like isoform X1
Refseq	XP_028965199.1	0.0	NAC domain-containing protein 82-like isoform X1
Refseq	XP_028965200.1	0.0	NAC domain-containing protein 82-like isoform X1
TrEMBL	A0A498IQ87	0.0	A0A498IQ87_MALDO; Uncharacterized protein
STRING	XP_008381837.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3302	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64060.1	9e-72	NAC domain containing protein 103

Link Out ? help Back to Top
Phytozome	MDP0000238035