PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000238773
Common NameLOC103420929, NAC11
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 364aa    MW: 40893.4 Da    PI: 6.9791
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000238773genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.41.4e-19151268128
            NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                    + tdeel v  L+k  +g++l+  +vi++v+ y++ P++Lp    ++ ++    ++F++++++++        t+ g W+a+g+  +++s +++  
  MDP0000238773  15 QCTDEELCVS-LEKIQDGSPLPG-NVIRDVNPYRCAPSNLPGyfsCL-SNGYGFWYFIRSSESNP--------TNIGQWRAKGEASRIFS-NSSIY 98 
                    669****965.999999999999.99***************523233.33344455666555443........6789*************.999** PP

            NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                    g + tL fy+g+ap+ +kt+Wvm+ey +
  MDP0000238773  99 GWRATLEFYRGQAPHETKTNWVMQEYWI 126
                    **************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.2948149IPR003441NAC domain
PfamPF023652.3E-815124IPR003441NAC domain
SuperFamilySSF1019411.23E-2617149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MYPQSAALPA DISLQCTDEE LCVSLEKIQD GSPLPGNVIR DVNPYRCAPS NLPGYFSCLS  60
NGYGFWYFIR SSESNPTNIG QWRAKGEASR IFSNSSIYGW RATLEFYRGQ APHETKTNWV  120
MQEYWITQKK SSESSKLKDV GSLCRVFLRD DETPNSNKLQ ELVNSDRAIH STHSVVPRVE  180
DRGSTSKPRV ENEASNDRET GTLVVTERLP VRDDNVQIMH ENDYLSRGDY LELLDLDTPA  240
SHSFSSVSSC LTMSSDECFD SLALLEELEP KSKQELVTNN NKLVVFASSS GSFDKSRDKE  300
RIRNRSPNPG SSVCAKIVTE NSSKNASRKQ KSDDRNEGPS NSQNANVGGT KKLKRKKYFC  360
FMPF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.131590.0fruit| leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008357187.10.0NAC domain-containing protein 83-like isoform X2
TrEMBLD9ZJ890.0D9ZJ89_MALDO; NAC domain class transcription factor
STRINGXP_008357186.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105882235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.16e-22NAC domain containing protein 28