PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000239354
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 386aa    MW: 42641.2 Da    PI: 10.2936
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000239354genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.59.9e-1186136146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 
                      +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
    MDP0000239354  86 KQKWTAEEEAALKAGVLKHGAGKWRTILTDPEfntilHLRSNVDLKDKWRN 136
                      79***********************************88**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.09281142IPR017930Myb domain
SuperFamilySSF466891.09E-1483148IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-1285137IPR009057Homeodomain-like
SMARTSM007178.4E-685140IPR001005SANT/Myb domain
PfamPF002493.1E-786136IPR001005SANT/Myb domain
CDDcd116605.92E-1787138No hitNo description
PROSITE profilePS5150423.952200271IPR005818Linker histone H1/H5, domain H15
SMARTSM005261.4E-15201266IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467854.3E-17201280IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.6E-15203275IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.4E-10208264IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
EYKSLVQIKN FQKQVLFVNF QEFVKILQIS DYPIDLSAAH IFVSFSVISP IRNCRHALPF  60
DSIDVNFLSW ISFWEGSGFR LMGAPKQKWT AEEEAALKAG VLKHGAGKWR TILTDPEFNT  120
ILHLRSNVDL KDKWRNINVT AIWGSRQKAK LALKRNLPTP KHENNPLAVS TVIQSHEEVV  180
DAKPLAISGG KSQTIESKDS KQPIARLDHL ILEAITNLKE PGGSDRAAIA MHIEEQYWAP  240
PKLKKLLSSK LKNMTATGKL IKVKHRYRIP LSSATSEKRR SSSALLLEGK QKDSLRKDKS  300
DVNILTKSQV DADLTKMRSM TAQEAAAAAA QAVAEAEAAI AAAEEAAREA EAAEAEAEAA  360
QVFAKAAMKA LKCRKLGKVL LSNFAS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.261650.0fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744770.0DQ074477.1 Malus x domestica MYBR6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018502609.10.0PREDICTED: telomere repeat-binding factor 1 isoform X1
RefseqXP_018502610.10.0PREDICTED: telomere repeat-binding factor 1 isoform X1
SwissprotQ8VWK47e-81TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A498I0M80.0A0A498I0M8_MALDO; Uncharacterized protein
STRINGXP_008341414.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-71telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]