PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000239596
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 382aa    MW: 44119.9 Da    PI: 8.3767
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000239596genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.34.1e-122243454110
            NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                    G  F+P+ e ++ +yL +k++g+ +++e+vi+++d+ k  P d ++      ++  e+++ yf+++++     + +++r t++gyWk   +++  +
  MDP0000239596 224 GESFNPNPETILIKYLFNKLAGRATPVEDVIRHIDLQKGMPPDANQvpxslfCHGDENRSAYFYICAEAVL-GDVKTTRPTSNGYWKLLSNEQVHI 318
                    789***********************************999988644667654444666889999998876.57899999*******877654333 PP

            NAM  94 sk...kgel.....vglkktLvfy....k 110
                    +    +  +     vg  +t  +y    k
  MDP0000239596 319 QMsgdG--VatvchVGNARTWRYYgrdlK 345
                    323431..245666999999999944332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF477691.65E-1161138IPR013761Sterile alpha motif/pointed domain
Gene3DG3DSA:1.10.150.501.0E-770104IPR013761Sterile alpha motif/pointed domain
PfamPF076479.5E-770106IPR001660Sterile alpha motif domain
PROSITE profilePS5010511.55770105IPR001660Sterile alpha motif domain
PROSITE profilePS5100513.187221382IPR003441NAC domain
SuperFamilySSF1019413.79E-9223367IPR003441NAC domain
PfamPF023655.7E-6224361IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MTHCFXITAR TIILHTSLPL LLYLETRFYD YELLSPYHCT NPKPKSVKKG XMIREMSKEQ  60
PPEPLDFFIW TVEDVGLWLE EIKLGSYRQT FKENGVNGEY LEGMSMFTTE QILRFIRRCH  120
MKWGDFITLC KELRRIKGRW RRENLECWIL XEVSKLKLLT SLNYLLNYVE SSLLIYRTER  180
LGGLTLLALN AIGDGSGVYL SRRQSIYIKA ITESCTEADL DERGESFNPN PETILIKYLF  240
NKLAGRATPV EDVIRHIDLQ KGMPPDANQV PXSLFCHGDE NRSAYFYICA EAVLGDVKTT  300
RPTSNGYWKL LSNEQVHIQM SGDGVATVCH VGNARTWRYY GRDLKRPMRA ASETCFKIRE  360
YWYAQSVPTA KIEINSAGII KS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.42631e-132cell culture| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1040822