PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000239939
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CPP
Protein Properties Length: 855aa    MW: 93790.9 Da    PI: 8.2225
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000239939genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.75.4e-14182220241
            TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                    ++k+CnCk+s+Clk+YCeCf ag +C+  C+C++C+N+ +
  MDP0000239939 182 KQKQCNCKNSRCLKLYCECFTAGIYCEG-CNCSNCHNNVD 220
                    89*************************9.********986 PP
2TCR51.12.6e-16266305140
            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    +++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  MDP0000239939 266 RHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 305
                    589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.4E-16181221IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.024182306IPR005172CRC domain
PfamPF036385.4E-11183218IPR005172CRC domain
SMARTSM011145.7E-20266307IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.8E-12269304IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MRIWEANCAC WHLNLLEING AERNGLRSRA QEIGEAIGFH DAVSIVXECG GAGRTATAXD  60
TVSGAAAATN LTGKTTVAFA FTVAAAGGGP FPEAINAAAG DSAVSGSAES RAARKRSDSA  120
PGAQAFASEF IWLNLVLNIG NVEIGFDVVX NLSCGRKVVQ NCKQESPLSR QRGDGKDCTP  180
KKQKQCNCKN SRCLKLYCEC FTAGIYCEGC NCSNCHNNVD NEAARQDARG AILERNPNAF  240
QPKIASSPQE SRDGREDAGE IQAAGRHNKG CHCKKSGCLK KYCECFQANI LCSENCKCMD  300
CKNFEGSEER RALYHEGXNT VAYMQQANAA ISGAIGTSGY GTPLVSRKRK GYELYFTTGN  360
QSTHPIAQSQ QENHLRPPMT SSSQLSVPIF HAANAAVSRP SKTTIYRTLL EPYCPNGLSQ  420
DDKFLGNRQR ETIXKTNATS STQEGNKHKT EHDKQHDDHD LIGVNQADRD ASRFSGSNGG  480
DVQDSRPMSP GTLALMCDEQ DKMFMEAGLP NGAXTDNPSM PQKLTQDIGF TEVYVEQERL  540
VLTGFRDCLN HLITRGSIKE TMCSPQAKRE RVSXKESVQV GTAKPTTEPR YQKEAYSNDI  600
VKSPLSSANG KILQPVTTVT SXDNDLTLKG WKPGNLVEEL EKANPMKALF PEAIPCHIIN  660
NIRFWRKRQQ RDEDPFTHHC SSTTSAIQLT KDHARTRATS SVPXSHTCLS VPPSPPKLSC  720
NYRPKSQARS SRSKLSDCDV SEMEEARKLR SEFLQVLRSR RSGEVPMXVE PAKPVANPLF  780
QEANPPSFSE VRIWFPFGNA LYQFVNSTAG NQAPNDPAXG NRGQXLVRXV SEAVRPWLXS  840
CVRRFLLIYL PSVHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-2918331511132Protein lin-54 homolog
5fd3_B7e-2918331511132Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.303420.0bud| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150358e-40AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028949716.10.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A498HMG50.0A0A498HMG5_MALDO; Uncharacterized protein
STRINGXP_008361154.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-122Tesmin/TSO1-like CXC domain-containing protein