 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
MDP0000241137 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
| Family |
GRAS |
| Protein Properties |
Length: 474aa MW: 52989.1 Da PI: 5.9666 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MDP0000241137 | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 294.7 | 2.3e-90 | 59 | 471 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl..fsevsPilkfs 94
++lL++cA+a++++d++laq++L+ l+++a +dgd++qRl+ f++AL ar ar + ++ +a++ s+++ + +++++++++l f +++P+++f+
MDP0000241137 59 EQLLVHCAKAIETNDATLAQQILWVLNNIAPQDGDSNQRLTCAFLRALIARAARiGSCKVLAAMANSQANFTIHTHKFSVVELasFIDLTPWHRFG 154
79****************************************************5444667777777777666888888888789*********** PP
GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl... 181
+ +aN aIleaveg + vHi+D+++++++Q p+L +a+asR+ +pp l++T+ g +e + ++ee+g++L +fA++ ++ +ef+v+
MDP0000241137 155 FTAANAAILEAVEGYSVVHIVDLSLTHCMQIPTLVDAIASRQdgnVSPPLLKLTVAGTMEDVppmLDLSYEELGSKLVNFARSRNIXLEFRVIpss 250
******************************************655569**********998898888999***********************888 PP
GRAS 182 ....vakrledleleeLrvkp.gEalaVnlvlqlhrll..........................desvsleserdevLklvkslsPkvvvvveqea 246
a+ +++l++++L + gEal+Vn++++lh++ ++s ++s r+ +Lk +++l P++vv+v++++
MDP0000241137 251 ytdgFANLIQQLRVQNLVYAEsGEALVVNCHMMLHYISeealtlpainpnpissgstssyafdvASSSLSSSLRTMFLKELRGLDPTIVVLVDEDV 346
5555555555556666655559****************************************98555555667*********************** PP
GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
d++s++ + r+ +a++y + +d+ ++ lpr s++r+++E+ + ++i+nv+a g++r+er e + +W +r+++a F++v+++ +a++++k++l
MDP0000241137 347 DLTSNNPVCRLRSAFNYLWIPYDTXDTFLPRGSKQRQWYEAD-VCWKIENVIAYXGFQRVERLEPKCRWVQRMRNANFRSVSFGXDAVSEVKAMLD 441
******************************************.99*************************************************** PP
GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaW 373
+++ g+ ++ e++ +vl+Wk++++v+++aW
MDP0000241137 442 EHA-AGWGLKREEEDVVLTWKGHNVVFATAW 471
***.8999*********************** PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 474 aa
Download sequence Send
to blast |
MMQFTDTPPP TXHQIITTPY SNNLPIMMNK NQTYXTRLWP GFPTSKSLGT NFGDANCMEQ 60
LLVHCAKAIE TNDATLAQQI LWVLNNIAPQ DGDSNQRLTC AFLRALIARA ARIGSCKVLA 120
AMANSQANFT IHTHKFSVVE LASFIDLTPW HRFGFTAANA AILEAVEGYS VVHIVDLSLT 180
HCMQIPTLVD AIASRQDGNV SPPLLKLTVA GTMEDVPPML DLSYEELGSK LVNFARSRNI 240
XLEFRVIPSS YTDGFANLIQ QLRVQNLVYA ESGEALVVNC HMMLHYISEE ALTLPAINPN 300
PISSGSTSSY AFDVASSSLS SSLRTMFLKE LRGLDPTIVV LVDEDVDLTS NNPVCRLRSA 360
FNYLWIPYDT XDTFLPRGSK QRQWYEADVC WKIENVIAYX GFQRVERLEP KCRWVQRMRN 420
ANFRSVSFGX DAVSEVKAML DEHAAGWGLK REEEDVVLTW KGHNVVFATA WMPA
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP006085 | 9e-32 | AP006085.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT28L24, TM0128, complete sequence. |
