PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000241185
Common NameMYBR16
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 306aa    MW: 33094.9 Da    PI: 8.9365
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000241185genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-08654347
                     SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47
                      W +eEd+ + +a++++  +      W++Ia+ ++  ++  ++k ++q++
    MDP0000241185  6 VWNKEEDKEFENAIAMHWIDenskeMWEKIAELVP-SKSMGELKQHYQML 54
                     6*****************99***************.************86 PP
2Myb_DNA-binding38.92e-12137181347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
    MDP0000241185 137 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 181
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.969259IPR017884SANT domain
SMARTSM007174.7E-5357IPR001005SANT/Myb domain
SuperFamilySSF466896.42E-9560IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-4655IPR009057Homeodomain-like
PfamPF002494.7E-6654IPR001005SANT/Myb domain
CDDcd001673.29E-8755No hitNo description
PROSITE profilePS5129417.441129186IPR017930Myb domain
SuperFamilySSF466893.73E-17132187IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17133184IPR006447Myb domain, plants
SMARTSM007172.3E-10134184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-11135180IPR009057Homeodomain-like
CDDcd001671.06E-9137182No hitNo description
PfamPF002497.6E-11137181IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSSSSVWNKE EDKEFENAIA MHWIDENSKE MWEKIAELVP SKSMGELKQH YQMLVDDVGA  60
IEAGRVSPPN YAVDEAANTL SSSKDSGHRA SSSGASASDK RLNCGHGGGF SGLGHDSAGH  120
GGKGGSRADQ ERKKGIPWTE EEHRLFLLGL DKFGKGDWRS ISRNFVISRT PTQVASHAQK  180
YFIRLNSMNR DRRRSSIHDI TSVNNGDVSS HQQPPITGQQ TNTYPPSAGT AIRVGGPQTA  240
KHRPQSHMAG LGMYGAPMGH PVSAPPGHMA SAVGTPVMLP PGHHPHAHPP YVVPVAYPMA  300
HPTMHQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.219630.0fruit| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in aboveground tissues, with the highest level in leaves. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2507970.0AB250797.1 Pyrus pyrifolia DNA, microsatellite locus IPPN018.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315883.10.0transcription factor DIVARICATA-like
SwissprotB8A9B24e-82MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH594e-82MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLA0A498JLA80.0A0A498JLA8_MALDO; Uncharacterized protein
STRINGXP_008374727.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106943340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.14e-76MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]