PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000241386

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Protein Properties

Length: 193aa MW: 21735.2 Da PI: 5.2901

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000241386	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.7	1.3e-15	77	165	1	95
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+ v +++v s ++v+p kf ++ + +s+ t+ g+ We+++ + +sg+ + ++W+eFv++n+Lk+gD +vF+l + s+++l ++ MDP0000241386 77 FEVVIAKANVKPSYQMVIPAKFQQTL---PSCSIH-TVLMFGGKNWEMTY--TCGSGQRKFDTNWREFVNDNNLKVGDACVFELLECSSTKLIFR 165 566777788899999*****8555...346644.455569****..66666667999******************875566666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.0E-18	72	170	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.73E-18	72	164	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.19E-17	75	170	No hit	No description
PROSITE profile	PS50863	12.844	77	172	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.2E-14	77	165	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0029	81	168	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MVVLRRTDAL ILNIHMFLAS VRIFSIYSPH VIGVCRQALA DSVAEAEDPQ MGDQPTSNPP 60 IELQGDEFWP LSEKPFFEVV IAKANVKPSY QMVIPAKFQQ TLPSCSIHTV LMFGGKNWEM 120 TYTCGSGQRK FDTNWREFVN DNNLKVGDAC VFELLECSST KLIFRVQILR GDIPSELLRK 180 LKGETVDAPI IID

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009341640.1	1e-95	PREDICTED: B3 domain-containing protein Os04g0386900-like
Refseq	XP_018499603.1	1e-95	PREDICTED: B3 domain-containing protein Os04g0386900-like
Refseq	XP_018499604.1	1e-95	PREDICTED: B3 domain-containing protein Os04g0386900-like
Refseq	XP_018499605.1	1e-95	PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBL	A0A498KGX4	2e-99	A0A498KGX4_MALDO; Uncharacterized protein
STRING	XP_008345126.1	1e-103	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9722	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	8e-10	related to vernalization1 1

Link Out ? help Back to Top
Phytozome	MDP0000241386