PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000241821
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 464aa    MW: 51529.3 Da    PI: 7.8441
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000241821genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.64e-52181482128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                     pGfrFhPtdeelv +yLk+kv++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+  
  MDP0000241821  18 LPGFRFHPTDEELVGFYLKRKVQQRPLSI-ELIKQLDIYKFDPWDLPKLAASGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSSeg 112
                    69***************************.89***************8888899***************************************977 PP

            NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  MDP0000241821 113 acsSSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 148
                    7766667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-5716182IPR003441NAC domain
PROSITE profilePS5100556.14617182IPR003441NAC domain
PfamPF023651.9E-2519148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDERSDNIGG EKMDEVILPG FRFHPTDEEL VGFYLKRKVQ QRPLSIELIK QLDIYKFDPW  60
DLPKLAASGE KEWYFYCPRD RKYRNSTRPN RVTGAGFWKA TGTDRPIYSS EGACSSSKCI  120
GLKKSLVFYK GRAAKGVKTD WMMHEFRLPS LTDSLPPKRS SSFMDKTIPA NDSWAICRIF  180
KKTNSSNAHQ RALSHHSWVS ALPETNTFGD HMLGSKGAHN ATHHHHEFSS ESMSILTSKI  240
NFSNNNDIKM SSTTSNIXPL DIYSNSYKPI NPLMMGCNVK LPHQYFPISS NFSNRSSDYF  300
SNPSFAFSSP SETSSGPAAK CTVDVSSLLL NMSSSMLGDY NGSNNVKGAS GESTNFDFSI  360
TNGGFSSMAL PHHHEVMQGN NNNLGNGHDS ITGLIKNIQN VNSNVIEEGD DQQWETSGRS  420
NIGFPLMSSL PLPMNVGGGD AWKSSLTWES SPCPSEMSTT RCYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-531918719170NO APICAL MERISTEM PROTEIN
1ut4_B1e-531918719170NO APICAL MERISTEM PROTEIN
1ut7_A1e-531918719170NO APICAL MERISTEM PROTEIN
1ut7_B1e-531918719170NO APICAL MERISTEM PROTEIN
3swm_A2e-531918722173NAC domain-containing protein 19
3swm_B2e-531918722173NAC domain-containing protein 19
3swm_C2e-531918722173NAC domain-containing protein 19
3swm_D2e-531918722173NAC domain-containing protein 19
3swp_A2e-531918722173NAC domain-containing protein 19
3swp_B2e-531918722173NAC domain-containing protein 19
3swp_C2e-531918722173NAC domain-containing protein 19
3swp_D2e-531918722173NAC domain-containing protein 19
4dul_A1e-531918719170NAC domain-containing protein 19
4dul_B1e-531918719170NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008340326.20.0protein FEZ-like
SwissprotQ9ZVH01e-100FEZ_ARATH; Protein FEZ
TrEMBLA0A498HLW20.0A0A498HLW2_MALDO; Uncharacterized protein
STRINGXP_008340326.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-101NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]