PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000242009
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 260aa    MW: 30014.8 Da    PI: 10.0735
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000242009genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.82.2e-312473150
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                   krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  MDP0000242009 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 73
                   79***********************************************8 PP
2K-box79.21e-26126214694
          K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                    + s++ea+++ +qqe++kL+++i+++q+++Rh+lGe L+sL+ keL++Le +Lek++++iRskK+  l  + + l+ k  e+++e+++ 
  MDP0000242009 126 SGSVSEANTQFYQQEASKLRRQIREIQNSNRHILGEALSSLNAKELKNLEGRLEKGISRIRSKKETELQHHNNFLRAKIAENEREEQQH 214
                    33499*************************************************************************99999988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.1E-411675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.4731676IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-291778IPR002100Transcription factor, MADS-box
CDDcd002652.50E-381779No hitNo description
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-331838IPR002100Transcription factor, MADS-box
PfamPF003191.3E-262572IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-335374IPR002100Transcription factor, MADS-box
PfamPF014862.3E-18132212IPR002487Transcription factor, K-box
PROSITE profilePS5129711.971134220IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEFPNQAPES SSQKKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSNRGRLY EYANNRFRDR EREPIIYGIF CQHGRGNQSL HGSMKLSSVR ATIDRYKKAC  120
ADPTNSGSVS EANTQFYQQE ASKLRRQIRE IQNSNRHILG EALSSLNAKE LKNLEGRLEK  180
GISRIRSKKE TELQHHNNFL RAKIAENERE EQQHTHMMPG TSYDQSMPSH SYDRNFLPAV  240
ILESNNNHYP HQVQTALQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-191675160Myocyte-specific enhancer factor 2B
1tqe_Q3e-191675160Myocyte-specific enhancer factor 2B
1tqe_R3e-191675160Myocyte-specific enhancer factor 2B
1tqe_S3e-191675160Myocyte-specific enhancer factor 2B
6c9l_A3e-191675160Myocyte-specific enhancer factor 2B
6c9l_B3e-191675160Myocyte-specific enhancer factor 2B
6c9l_C3e-191675160Myocyte-specific enhancer factor 2B
6c9l_D3e-191675160Myocyte-specific enhancer factor 2B
6c9l_E3e-191675160Myocyte-specific enhancer factor 2B
6c9l_F3e-191675160Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.29941e-135bud| cell culture| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|PubMed:11414613}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4016371e-132AF401637.1 Malus x domestica AGAMOUS-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008342376.11e-159agamous-like MADS-box protein AGL1 isoform X1
SwissprotQ93XH41e-102MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A0D4ZYR11e-155A0A0D4ZYR1_PYRPY; AG-like MADS-box protein
TrEMBLQ7X9261e-155Q7X926_MALDO; AGAMOUS-like protein
STRINGXP_008342376.11e-158(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.31e-101MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]