PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000242297

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 514aa MW: 58755.5 Da PI: 6.8348

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000242297	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	37	1.1e-11	32	168	8	128
NAM 8 hPtdeelvveyLkkkvegkkleleev...ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...........tksgyWkatgkd 89 +P+d+el+ ++L++ ++g++ + + i+ + ++ P++L ++ +++y ++ ++ + + r g W ++ ++ MDP0000242297 32 EPSDQELILYFLNRWINGQPQPS-QLvaqIDVDEFRSLTPEQLC----NDLQQLYLYTAIERGPGGHDLPDRRvyigqdpldrnRILGWWISKVSK 122 6*****************666.4302255556778896....3457899999998887765555553366666666544479**** PP NAM 90 kevlskkgel......vglkktLvfykg.rapkgektdWvmheyrl 128 k++l ++ + +g kk vf+ g ++++++ t+W m ey+ MDP0000242297 123 KNILGINTDDpklqisIGYKKPYVFHIGnKRKDAVVTHWHMIEYTT 168 9874333556667*******874667789*******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	14.771	25	192	IPR003441	NAC domain
SuperFamily	SSF101941	8.5E-14	32	191	IPR003441	NAC domain
Pfam	PF02365	2.2E-7	32	167	IPR003441	NAC domain
Pfam	PF03017	1.5E-5	240	297	IPR004264	Transposase, Tnp1/En/Spm-like
SuperFamily	SSF54001	5.49E-10	365	505	No hit	No description
Gene3D	G3DSA:3.30.310.130	7.3E-4	443	488	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MSAPPPDVPE HLVRDGDMHQ LLNDIRDRVI DEPSDQELIL YFLNRWINGQ PQPSQLVAQI 60 DVDEFRSLTP EQLCNDLQQL YLYTAIERGP GGHDLPDRRV YIGQDPLDRN RILGWWISKV 120 SKKNILGINT DDPKLQISIG YKKPYVFHIG NKRKDAVVTH WHMIEYTTEP DHSNSKGSGI 180 LYNWSLKKIY LGKKKSTRQR RGSNNVQADE CHDGSCPINA PRDPTIPADA DLALDFDEFN 240 NKKAVACGQI LTLGSNTIHN VSLGEGNVRV AINLALDEDA LLPIPVRGEM RTVGDAVKSI 300 VAWPRDLVIM LKKGVKEKQV TKERTLKGKS FKAVQDNQPQ SWKDLEDHTN NKMHDDLVFX 360 FSTEDQAFGH SRTVYLARQC ILDLIGMQQL EQEVIVAYMS HLYEQYKHST TIEEVRFVDP 420 ADVCKTRNKG DPLIQERADR LTLRLMQVTS SSIFLIPYNP TNHWFLTIIS QSKDIVYVMN 480 SINNWPLDKD WKNVINTGIK GYNEQTGRQH KVPE

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MSAPPPDVPE HLVRDGDMHQ LLNDIRDRVI DEPSDQELIL YFLNRWINGQ PQPSQLVAQI  60
DVDEFRSLTP EQLCNDLQQL YLYTAIERGP GGHDLPDRRV YIGQDPLDRN RILGWWISKV  120
SKKNILGINT DDPKLQISIG YKKPYVFHIG NKRKDAVVTH WHMIEYTTEP DHSNSKGSGI  180
LYNWSLKKIY LGKKKSTRQR RGSNNVQADE CHDGSCPINA PRDPTIPADA DLALDFDEFN  240
NKKAVACGQI LTLGSNTIHN VSLGEGNVRV AINLALDEDA LLPIPVRGEM RTVGDAVKSI  300
VAWPRDLVIM LKKGVKEKQV TKERTLKGKS FKAVQDNQPQ SWKDLEDHTN NKMHDDLVFX  360
FSTEDQAFGH SRTVYLARQC ILDLIGMQQL EQEVIVAYMS HLYEQYKHST TIEEVRFVDP  420
ADVCKTRNKG DPLIQERADR LTLRLMQVTS SSIFLIPYNP TNHWFLTIIS QSKDIVYVMN  480
SINNWPLDKD WKNVINTGIK GYNEQTGRQH KVPE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	1e-08	NAC domain containing protein 3

Link Out ? help Back to Top
Phytozome	MDP0000242297