PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000242656

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 319aa MW: 35941.2 Da PI: 5.2232

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000242656	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	112.6	4.4e-35	6	106	29	129
NAM 29 eleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWv 122 + ++++evdi+k+ PwdLp k + ++++ +wyfF+++++ky+tg r++r+t++gyWkatg+d++vl +ge+ g ktL+f++grapkge+tdWv MDP0000242656 6 PY-NFVAEVDIHKYAPWDLPeKsSWQSGDLKWYFFCPTERKYPTGARAKRTTERGYWKATGNDRSVLY-NGEVAGKIKTLIFHTGRAPKGERTDWV 99 45.6799**********95345666778**********************************.999******************** PP NAM 123 mheyrle 129 mheyrle MDP0000242656 100 MHEYRLE 106 ***85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	42.57	1	128	IPR003441	NAC domain
SuperFamily	SSF101941	6.93E-44	2	128	IPR003441	NAC domain
Pfam	PF02365	1.8E-12	24	105	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MGKRLPYNFV AEVDIHKYAP WDLPEKSSWQ SGDLKWYFFC PTERKYPTGA RAKRTTERGY 60 WKATGNDRSV LYNGEVAGKI KTLIFHTGRA PKGERTDWVM HEYRLESKDL ANRGVPQESY 120 VLCTIFQKEG PGPKNGAQYG APLMEEDWSD DEAENCSEAV XHANMPEPNL VLPSNYNIPS 180 LLARIPXKVY TYVLHLNRAY QMXYHFLAMF PNWFPELGNV VPIGNASATP HVVSNDIYVT 240 LGDLGKVARV GEDGCSFSSL PNSVCATGQM PRGDDGQYLE LDDLGELFNY XDSTHTRPPS 300 MFGEPQTLLG EMPFQGETX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-33	8	134	47	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-33	8	134	47	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-33	8	134	47	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-33	8	134	47	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-33	8	134	50	174	NAC domain-containing protein 19
3swm_B	2e-33	8	134	50	174	NAC domain-containing protein 19
3swm_C	2e-33	8	134	50	174	NAC domain-containing protein 19
3swm_D	2e-33	8	134	50	174	NAC domain-containing protein 19
3swp_A	2e-33	8	134	50	174	NAC domain-containing protein 19
3swp_B	2e-33	8	134	50	174	NAC domain-containing protein 19
3swp_C	2e-33	8	134	50	174	NAC domain-containing protein 19
3swp_D	2e-33	8	134	50	174	NAC domain-containing protein 19
4dul_A	2e-33	8	134	47	171	NAC domain-containing protein 19
4dul_B	2e-33	8	134	47	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269\|PubMed:20388856}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250\|UniProtKB:Q9C8W9}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008381837.2	0.0	NAC domain-containing protein 82-like isoform X1
Refseq	XP_008381838.2	0.0	NAC domain-containing protein 82-like isoform X1
Refseq	XP_017190291.2	0.0	NAC domain-containing protein 82-like isoform X1
Refseq	XP_028965199.1	0.0	NAC domain-containing protein 82-like isoform X1
Refseq	XP_028965200.1	0.0	NAC domain-containing protein 82-like isoform X1
Swissprot	Q9FY82	5e-67	NAC82_ARATH; NAC domain-containing protein 82
TrEMBL	A0A498IQ87	0.0	A0A498IQ87_MALDO; Uncharacterized protein
STRING	XP_008348770.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3302	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64060.1	6e-71	NAC domain containing protein 103

Link Out ? help Back to Top
Phytozome	MDP0000242656

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Deeken R, et al. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J., 2008. 55(5): p. 746-59 [PMID:18485061] Ohbayashi I, et al. Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis. Plant Cell, 2017. 29(10): p. 2644-2660 [PMID:28899981]