PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000243113
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 229aa    MW: 24928.9 Da    PI: 8.7337
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000243113genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-203079255
            AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   +y+GVr+++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa++ l+g
  MDP0000243113 30 RYRGVRRRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARILRG 79
                   69*******.**********883....5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.9E-133079IPR001471AP2/ERF domain
SMARTSM003801.6E-343093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-323088IPR001471AP2/ERF domain
CDDcd000181.47E-183089No hitNo description
SuperFamilySSF541715.3E-233089IPR016177DNA-binding domain
PROSITE profilePS5103223.6043087IPR001471AP2/ERF domain
PRINTSPR003678.5E-113142IPR001471AP2/ERF domain
PRINTSPR003678.5E-115369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MRRGRGAATR AAAPPAEPTG SRRSIGKEVR YRGVRRRPWG RFAAEIRDPW KKTRVWLGTF  60
DSAEDAARAY DAAARILRGP KAKTNFPISC AYPPFYNNPT DTIEAKLFGS GYGFQDNPVV  120
DPQRPASSSL SSTVESFSGP RPPPQFTTMA AELSRPKRQP RTPPVVPEDC HSDCDSSSSV  180
VEDDGDFVAS SSFRKAPLPF DLNFPPLDVD GDLGGGVDGH DLRCTALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-202387672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.64680.0bud| cell culture| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324760.0GU732476.1 Malus x domestica AP2 domain class transcription factor (AP2D52) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361043.11e-117PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9LDE44e-55ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A0H3YBC41e-129A0A0H3YBC4_9ROSA; Transcription factor ERF13
STRINGXP_008345035.11e-165(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.14e-18ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]