PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000243502

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 352aa MW: 39696.8 Da PI: 9.9599

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000243502	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	97.5	1.4e-30	167	254	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++vGF +r+++ ++s r+g++++r++vC+keg+r+++ k+ +++r++ra tr gCka+++vkk+k+gkw+vt++ +eHnH+l+ MDP0000243502 167 FYDAYATQVGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKTRAKR-TENRKPRAITREGCKAMIVVKKDKSGKWVVTRFIKEHNHPLV 254 9*****************************************99.9*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-28	167	254	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MGFLMFNGFG ASLHGATNSQ SPNFHNLQGG QLQAQNYGGV GAAMNQAPSQ EKRKLRKGKE 60 VIRREIRSSF AAVDHSSAIC ARARHLPKPE EAKSSSLFAS SLLQKPSXLL GRDLSVKTMD 120 DEELSMSKDE DVLESSNGKD AVTSEGNSDA EPFVGMEFET EEAAKVFYDA YATQVGFIMR 180 VDAFRRSMRD GKVVWRRLVC NKEGFRKTRA KRTENRKPRA ITREGCKAMI VVKKDKSGKW 240 VVTRFIKEHN HPLVGTPANG RRSMLLSQAP EFWFVDEVSR CPLLEQDEKD LKIRELTAEL 300 QRERKRSATY QEQLDMVLRE MEQHSNHLSR NIDGIVQSVK EIESKRVAPS NG

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MGFLMFNGFG ASLHGATNSQ SPNFHNLQGG QLQAQNYGGV GAAMNQAPSQ EKRKLRKGKE  60
VIRREIRSSF AAVDHSSAIC ARARHLPKPE EAKSSSLFAS SLLQKPSXLL GRDLSVKTMD  120
DEELSMSKDE DVLESSNGKD AVTSEGNSDA EPFVGMEFET EEAAKVFYDA YATQVGFIMR  180
VDAFRRSMRD GKVVWRRLVC NKEGFRKTRA KRTENRKPRA ITREGCKAMI VVKKDKSGKW  240
VVTRFIKEHN HPLVGTPANG RRSMLLSQAP EFWFVDEVSR CPLLEQDEKD LKIRELTAEL  300
QRERKRSATY QEQLDMVLRE MEQHSNHLSR NIDGIVQSVK EIESKRVAPS NG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008364635.2	1e-159	protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	A0A498IX10	1e-141	A0A498IX10_MALDO; Uncharacterized protein
STRING	XP_008348960.1	1e-155	(Malus domestica)
STRING	XP_008364635.1	1e-155	(Malus domestica)
STRING	XP_008382553.1	1e-155	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-89	FAR1 family protein

Link Out ? help Back to Top
Phytozome	MDP0000243502