PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000244980
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 584aa    MW: 65347.8 Da    PI: 6.5792
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000244980genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.9e-16344386246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++T++E+e ++d++k  G++ W++Ia++++ gRt++++k++w++
    MDP0000244980 344 DNFTPQEEEHIIDLHKAIGSR-WSRIAKRLP-GRTDNDVKNYWNT 386
                      68*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007021.8E-5762259IPR006620Prolyl 4-hydroxylase, alpha subunit
PROSITE profilePS5147113.511138260IPR005123Oxoglutarate/iron-dependent dioxygenase
PfamPF136408.4E-21143259IPR005123Oxoglutarate/iron-dependent dioxygenase
PROSITE profilePS500904.31317337IPR017877Myb-like domain
SuperFamilySSF466891.58E-21323397IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-10323350IPR009057Homeodomain-like
PROSITE profilePS5129422.875338392IPR017930Myb domain
SMARTSM007177.6E-14342390IPR001005SANT/Myb domain
PfamPF002497.1E-14345386IPR001005SANT/Myb domain
CDDcd001673.09E-10345388No hitNo description
Gene3DG3DSA:1.10.10.601.5E-20351389IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0005768Cellular Componentendosome
GO:0005802Cellular Componenttrans-Golgi network
GO:0003677Molecular FunctionDNA binding
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418Molecular FunctionL-ascorbic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MDLGYFLALS LCFLCISSHL AHSLVPGSLD EKKTEGSVIR FRRGASSATF DPTRVSQLTW  60
RPRAFLFKGF LSEEECDHLI EIAKNKLEKS MVADNESGKS IESEVRTSSG MFLLKAQDEV  120
VANIEARIAA WTFLPIENGE SIQILHYEHG QKYEPHFDYF HDKANQQLGG HRIATVLMYL  180
SNVEKGGETV FPNSEGKLSQ IKDDDASDCA KDGYSVKPYK GDALMFFSLH PNGTTDPSSL  240
HGSCPVIEGE KWSATKWIHV RSFEKSLLKS ATGKGCSDEN DNCPLWAKAG RVAXRVRPKG  300
GQYLQSAVKC LGVHNIELCH RLNRCGKSCR LRWTNYLRPD LKHDNFTPQE EEHIIDLHKA  360
IGSRWSRIAK RLPGRTDNDV KNYWNTKLKK KLSKMGIDPV THKPYSQILS DYGNISGLPS  420
TDGNHPFSSL FKQSKSAFAP ELNSSCITGI PYTNVTXNPN INGQGFSQPT NACWESHEAQ  480
ITPSSSSFNW REYLLYDPFT SADHLKQEQD LHGVMMSSPE NPTFGVQGSS DAIEGCDFVG  540
QRSYDWPDHQ ASSTSMCSFV ETILDQDSEM QAAFPQLLDA SFDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gze_A1e-855526014218Predicted protein
3gze_B1e-855526014218Predicted protein
3gze_C1e-855526014218Predicted protein
3gze_D1e-855526014218Predicted protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.115270.0cell culture| fruit
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in proline-rich peptide sequences of plant glycoproteins and other proteins. Hydroxyprolines are important constituent of many plant cell wall glycoproteins such as extensins, hydroxyproline-rich glycoproteins, lectins and arabinogalactan proteins.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008379308.20.0probable prolyl 4-hydroxylase 7
SwissprotQ8L9701e-140P4H7_ARATH; Probable prolyl 4-hydroxylase 7
TrEMBLA0A498J2T30.0A0A498J2T3_MALDO; Uncharacterized protein
STRINGXP_008379308.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF847034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.14e-53MYB family protein