PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000245538
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 396aa    MW: 43970 Da    PI: 6.7506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000245538genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.21.2e-071571882055
                    HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    f+ Lr+++P++    ++K +Ka+ L +++eYI+ Lq
  MDP0000245538 157 FQMLRDIIPQN----DQKRDKASLLLEVIEYINFLQ 188
                    999*******9....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.2E-586108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.16E-887190No hitNo description
PROSITE profilePS508889.98589187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0072142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-8154198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-10156194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-5157188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MASWFMSLLR SLSGFFHXXT KGSRSGRPED GPEAWNLAAA KHFSNKSEMA KASTGHHDEF  60
EDDDEVSHGA NEEMIGELAV KVEGQGREKN RSKHSETEQR RRSKINERQA LQAQSFTLSI  120
SSTPLIVLCR SWXYIVRFSV LLELEKFLIR MPIVTIFQML RDIIPQNDQK RDKASLLLEV  180
IEYINFLQEK KNHNRSGENL ADQSQVMNNG SGXENNVVVS PAMLPNTQNS LDHIXGLATQ  240
LVPNVQQQXI LDSIGSGVPT QPLQESIXDV RNMASRPQFP SLAGITSSTX SDXKXNKQDE  300
HSGSGSISSA YSQGVLNNLT QALQSAGLDL SLASISVQMD VANRASSGLT SVASXSKARV  360
NRSMNNQMMT QAQHSRDFFS GFLVFSVQXF RDLDHX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008379463.21e-171transcription factor BIM2-like
TrEMBLA0A498J3F40.0A0A498J3F4_MALDO; Uncharacterized protein
STRINGXP_008379463.11e-170(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38860.18e-16BES1-interacting Myc-like protein 3