PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000246608
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 650aa    MW: 71239.7 Da    PI: 10.0164
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000246608genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.63e-13338378955
            AP2   9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    ++ +g+WvAeI+       rk+ +lg++ t e+Aa+a++aa+++l+g
  MDP0000246608 338 RS-SGKWVAEIHQK-----RKKLWLGTYPTDEMAARAYDAAALALKG 378
                    55.8********94.....6************************998 PP
2AP261.81.5e-19516563255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr ++ +g+WvAeIr       rk+f+lg++ tae+Aa+a++aa+++l+g
  MDP0000246608 516 KYRGVRLRS-SGKWVAEIRQK-----RKKFWLGTYPTAEMAARAYDAAALSLKG 563
                    8*****999.7*********4.....6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
HamapMF_0053118.20838134IPR002222Ribosomal protein S19/S15
SuperFamilySSF545703.53E-2355127IPR023575Ribosomal protein S19, superfamily
Gene3DG3DSA:3.30.860.101.2E-2756131IPR023575Ribosomal protein S19, superfamily
PfamPF002031.5E-2256125IPR002222Ribosomal protein S19/S15
PRINTSPR009751.9E-167897IPR002222Ribosomal protein S19/S15
PROSITE patternPS00323098122IPR020934Ribosomal protein S19 conserved site
PRINTSPR009751.9E-1698110IPR002222Ribosomal protein S19/S15
PRINTSPR009751.9E-16110125IPR002222Ribosomal protein S19/S15
CDDcd000181.51E-11330388No hitNo description
PROSITE profilePS5103219.467331386IPR001471AP2/ERF domain
SMARTSM003801.4E-24331392IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-22331387IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-16331387IPR016177DNA-binding domain
PfamPF008472.4E-9338378IPR001471AP2/ERF domain
CDDcd000181.95E-16515573No hitNo description
SMARTSM003801.0E-30516577IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-26516572IPR001471AP2/ERF domain
PfamPF008475.0E-14516563IPR001471AP2/ERF domain
PROSITE profilePS5103221.614516571IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-19516572IPR016177DNA-binding domain
PRINTSPR003671.8E-9517528IPR001471AP2/ERF domain
PRINTSPR003671.8E-9553573IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MAKRLIATLN RGLVGKLFSE SSTKLNSGKP VVVGTCGLEK ACYSTQAKQE SHFYDGAFVD  60
AFLMKMKNNK DLLNNKKIWS RRSTILPEFV GTTVRIYNGK NHIRCKITEE KVGHKFGEFA  120
MTRKRRIQAK TTAPVRPVKP GKKAGKKNLM AEXGFPSECG QAGRDGAEIK IYGGIFETKE  180
HIEPSLKSEA IQTARLYKHX QNTIKPRRKX PLAHLHNDKT XHAHPXKSLP KPESVSPLSI  240
PAAAAKAAAE AEAASGKIRL YGKQRLKKAE PMSKAQESTI TCASTDCDVE KLVSXAAGQE  300
PNNVEEQSNN KKRQTNSTLT SDDHSDSNHQ KYRXXRLRSS GKWVAEIHQK RKKLWLGTYP  360
TDEMAARAYD AAALALKGAS ANLNFPELAQ ALPLSDSLSP MDIQVAASAS EEKQIIGGAV  420
TKEAEPSSKA QESTSICASI DCDVDKLVST AAENCTSEKG QEPNNVEEQN NKKKRQRTLN  480
CTSKKGQQPN NVEEQNNKKR QRTSTSDDHS GSNHQKYRGV RLRSSGKWVA EIRQKRKKFW  540
LGTYPTAEMA ARAYDAAALS LKGASANLNF PELAQALPQS NSLSPMDIPV AASASEEKHI  600
VGEAVTEEAE PSSKAQESTS ICASTDCDAD KLVSIIEGCP HQVKNLKVKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6gzq_S21e-155612627530S ribosomal protein S19
6gzx_S31e-155612627530S ribosomal protein S19
6gzx_S41e-155612627530S ribosomal protein S19
6gzz_S31e-155612627530S ribosomal protein S19
6gzz_S41e-155612627530S ribosomal protein S19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1471476KKKRQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.122070.0cell culture| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498KHV90.0A0A498KHV9_MALDO; Uncharacterized protein
STRINGXP_008375741.14e-97(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3827022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-22ERF family protein