PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000247372

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bZIP

Protein Properties

Length: 421aa MW: 46968.2 Da PI: 6.2654

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000247372	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.7	4e-11	157	202	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l MDP0000247372 157 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLT 202 9****************************************98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-9	153	240	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.714	155	205	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.8E-10	157	205	No hit	No description
Pfam	PF00170	7.8E-10	157	201	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.14E-11	157	211	No hit	No description
CDD	cd14703	3.46E-23	158	205	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MQDPANPKPD PSSSSQDSHH PRMAPPFPDT TPSAPFRGSY HRRTQSEVHF RIPDDLDLLQ 60 DPSGSFEELG GSEDDIFSTY MDMEKLGSKL DDGPSDVKPE NADGSMQEEG GGGFGGEMSA 120 RPRHRHSNSV DASLDSVEAK KAMAPDKLAE LWTVDPKRAK RILANRQSAA RSKERKARYI 180 SELERKVQTL QTEATTLSAQ LTLFQVLTEM LIWLAVYDYS NRDTSGLSSE NTELKLRVQA 240 MEQQAQLRDA LNDALKKELE RLKVATGEQI THTDSYNLGM HHFPYSQSPF YSNQAQPGSR 300 DSQNIHMPQF HQFQPNMSAH HQPMLASSQL HACSDMSQQD PIGRFQGLDI NNRAALGREL 360 LMNAYRFPNS FVRVAHVILR DAALRAGEPX SPPCVVYSFV TVDNLTCCGI HVVMSIPCHS 420 N

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MQDPANPKPD PSSSSQDSHH PRMAPPFPDT TPSAPFRGSY HRRTQSEVHF RIPDDLDLLQ  60
DPSGSFEELG GSEDDIFSTY MDMEKLGSKL DDGPSDVKPE NADGSMQEEG GGGFGGEMSA  120
RPRHRHSNSV DASLDSVEAK KAMAPDKLAE LWTVDPKRAK RILANRQSAA RSKERKARYI  180
SELERKVQTL QTEATTLSAQ LTLFQVLTEM LIWLAVYDYS NRDTSGLSSE NTELKLRVQA  240
MEQQAQLRDA LNDALKKELE RLKVATGEQI THTDSYNLGM HHFPYSQSPF YSNQAQPGSR  300
DSQNIHMPQF HQFQPNMSAH HQPMLASSQL HACSDMSQQD PIGRFQGLDI NNRAALGREL  360
LMNAYRFPNS FVRVAHVILR DAALRAGEPX SPPCVVYSFV TVDNLTCCGI HVVMSIPCHS  420
N

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269\|PubMed:27896439}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ445899	2e-78	HQ445899.1 Malus x domestica cultivar Evereste fire blight resistance locus LG12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008369370.1	0.0	bZIP transcription factor 18
Swissprot	O22873	1e-110	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A498JLQ8	0.0	A0A498JLQ8_MALDO; Uncharacterized protein
STRING	XP_008369370.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-105	bZIP family protein

Link Out ? help Back to Top
Phytozome	MDP0000247372

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]