PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000248130
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 179aa    MW: 20633.9 Da    PI: 10.7629
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000248130genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.11.4e-29125175151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                    krien   rqvtfskRrng+lKKA+ELSvLCdaeva++ifs +gklye+ss
  MDP0000248130 125 KRIENAASRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSARGKLYEFSS 175
                    79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-39117176IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.258117177IPR002100Transcription factor, MADS-box
CDDcd002652.42E-38119176No hitNo description
PROSITE patternPS003500119173IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-31119139IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-27119177IPR002100Transcription factor, MADS-box
PfamPF003195.8E-26126173IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-31139154IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-31154175IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGKNLTHHTP LKQKPRDRPR DVDNRRRVAT PYWTITLSNR TEKFHASAPR TDKDFXNEPF  60
LRCPTGAPNL PATCCHSDGP DITGNRQEWL QGSLIFXEIG FWGFPXFDFR VRKGEKMVRG  120
KTQMKRIENA ASRQVTFSKR RNGLLKKAFE LSVLCDAEVA LVIFSARGKL YEFSSTRYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-17117176160MEF2C
5f28_B2e-17117176160MEF2C
5f28_C2e-17117176160MEF2C
5f28_D2e-17117176160MEF2C
6byy_A2e-17117176160MEF2 CHIMERA
6byy_B2e-17117176160MEF2 CHIMERA
6byy_C2e-17117176160MEF2 CHIMERA
6byy_D2e-17117176160MEF2 CHIMERA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.162571e-136bud| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3702121e-133AB370212.1 Malus x domestica MADS16 mRNA for MADS-box transcription factor, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.11e-33AGAMOUS-like 14