PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000248470

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

AP2

Protein Properties

Length: 106aa MW: 11429.6 Da PI: 10.7224

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000248470	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	22.7	2.5e-07	71	101	1	27
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...k 27 s y+GV++++++gr++A+++d ++n k MDP0000248470 71 SIYRGVTRHRWTGRYEAHLWDkSTWNHnqnK 101 57*******************6666433332 PP

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MASSSSDPGP KTESGSGGGS GGGGVEASEA VIASDQLMVY RGVKKSKKER GCTAKERISK 60 MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNHNQN KKGKQX

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028948770.1	4e-69	AP2-like ethylene-responsive transcription factor At2g41710
Swissprot	Q8GWK2	6e-46	AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBL	A0A498I3A4	1e-67	A0A498I3A4_MALDO; Uncharacterized protein
STRING	XP_009363210.1	1e-67	(Pyrus x bretschneideri)
STRING	XP_008392327.1	6e-71	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6007	29	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41710.1	4e-48	AP2 family protein

Link Out ? help Back to Top
Phytozome	MDP0000248470