PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000248863
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARR-B
Protein Properties Length: 665aa    MW: 74934.5 Da    PI: 5.5332
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000248863genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.91.7e-26336388356
        G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     ++Wt+eLH++Fv+aveqL G ++A+P++il+lmk +gLt+++v+SHLQkYR++
  MDP0000248863 336 SVDWTSELHKKFVQAVEQL-GVDQAIPSRILDLMKTEGLTRHNVASHLQKYRMH 388
                    689****************.********************************96 PP
2Response_reg27.91.2e-10201261109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl+ d + + ++ +r+ le  +y +v+++ +  eal  +  +   +++ ++ ++  +  G+  ++ +++++ +lpii+ +     +++ +++ +Ga
  MDP0000248863  20 VLLLDGDTTSASQIRSKLEAMDY-IVTAFCNENEALSAFSSNPesFHVAIIEVNANN--GHWSFQFLETAK-ELPIIMTSNIHCLSTMMKCIALGA 111
                    78889999999************.***************777767*****9998875..555555565555.799999998888************ PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                     +fl Kp ++++l++
  MDP0000248863 112 VEFLRKPLSEDKLRN 126
                    ************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.2E-1516135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.3E-1516139No hitNo description
SMARTSM004480.005618128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011020.68319132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-720127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.77E-721131No hitNo description
Gene3DG3DSA:3.40.50.23002.3E-15188211No hitNo description
PROSITE profilePS5129412.04331390IPR017930Myb domain
SuperFamilySSF466893.67E-17333391IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-25334390IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-24334389IPR006447Myb domain, plants
PfamPF002492.4E-7338386IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MVCTANDLQE WKDFPKGLRV LLLDGDTTSA SQIRSKLEAM DYIVTAFCNE NEALSAFSSN  60
PESFHVAIIE VNANNGHWSF QFLETAKELP IIMTSNIHCL STMMKCIALG AVEFLRKPLS  120
EDKLRNIWQH VVHKVXRVWK CCFKIYHKVL CNSCKQKFSD FVXPEQAFNA GGSVISETLK  180
PVKESXVSMV QPKQENEEQN CKISKETENV LRVHENDQEQ SAGCDKYPAP STPQLKQVSR  240
LLDHGDCQDQ INCLSEKESG EHDNETKSVE TTCNNPIDEG NLLTIEPHHM LRKTAVKKEN  300
VSGDGSKSEV NMSRHPDNID SGNDNGGAAE NLXKASVDWT SELHKKFVQA VEQLGVDQAI  360
PSRILDLMKT EGLTRHNVAS HLQKYRMHKR HILPKEEDRR LLQPHHTRDP IHQRSYYPYS  420
HRPIMAFPPY HYTNPTLSMP PAYPMWGSQP PASSHPXTVQ MWGQPGYPHS QWQPSDQSWQ  480
YWNPYPGVMH CSSSSQLQAD AWGCPVMPPE QGGYSPYPQN TSGFQNAGGH AVENCHGYSM  540
PQNSFDIHPA EEVVDKIVKE AMSKPWLPLP LGLKPPSTEV SNLXHAVLDX LQKLDLKEXG  600
EDNGXPDEVQ KLDSIEKVEE DGDXEWQKVD LKAXEDXASE LQKVDLKAEE GGXGLEEEXK  660
SSGEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-15334387558ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.164940.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008373606.20.0two-component response regulator-like APRR2
RefseqXP_008373607.20.0two-component response regulator-like APRR2
RefseqXP_008373608.20.0two-component response regulator-like APRR2
RefseqXP_008373609.20.0two-component response regulator-like APRR2
TrEMBLA0A498JT420.0A0A498JT42_MALDO; Uncharacterized protein
STRINGXP_008373606.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-128ARR-B family protein