PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000249417

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Protein Properties

Length: 236aa MW: 26497.8 Da PI: 9.9183

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000249417	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.1	4.3e-15	135	223	2	98
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +k++++s+v+ +l l +f+++h + ++ + l de+g ++ + rk++ l++GWk+F+ a++L +gD +vF+l++ ++f +v MDP0000249417 135 VKTMLQSHVTGGFWLGLQVSFCKNHlpK----GDEVMXLIDEDGDEYPTIYLARKTG----LSGGWKGFAVAHDLVDGDALVFQLIRPTTF--KVY 220 699*****************888443....44589**********656665....**********************997777..888 PP EE- CS B3 96 vfr 98 ++r MDP0000249417 221 IIR 223 877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.6E-18	127	223	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.32E-22	127	224	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.97E-25	132	223	No hit	No description
PROSITE profile	PS50863	10.983	134	225	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-21	134	225	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-12	135	223	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MVTAKSKLSY EESRQQRLEE NKKRMEALNL PMLAQALNKT PNSPKPSPMK RAGKPRTYEV 60 QMVEVRRSTR VANRPAPDYK EVVAERVMIP RRSYXTNRHR DVANRVYASD EARAAAMVKA 120 DELEASLGSD HPTLVKTMLQ SHVTGGFWLG LQVSFCKNHL PKGDEVMXLI DEDGDEYPTI 180 YLARKTGLSG GWKGFAVAHD LVDGDALVFQ LIRPTTFKVY IIRVERPGQA SSEGST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017184860.2	1e-175	B3 domain-containing protein At5g42700-like isoform X2
Swissprot	Q9FMZ4	1e-77	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A498HT62	1e-170	A0A498HT62_MALDO; Uncharacterized protein
STRING	XP_008361009.1	1e-174	(Malus domestica)
STRING	XP_008393817.1	1e-174	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	4e-80	B3 family protein

Link Out ? help Back to Top
Phytozome	MDP0000249417

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]