PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000250597
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 301aa    MW: 34378.6 Da    PI: 9.4004
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000250597genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46e-17112159148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W+++Ed++l+d+++++G g+W+t ++  g+ R++k+c++rw +yl
    MDP0000250597 112 KGAWSKQEDLKLIDYIRKHGEGCWRTLPQAAGLLRCGKSCRLRWINYL 159
                      79******************************99************97 PP
2Myb_DNA-binding52.31.3e-16165210148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ ++E++l+v+++++lG++ W++Ia +++ gRt++++k++w+++l
    MDP0000250597 165 RGNFAEDEEDLIVKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 210
                      8999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-23103162IPR009057Homeodomain-like
PROSITE profilePS5129416.345107159IPR017930Myb domain
SuperFamilySSF466891.38E-27110206IPR009057Homeodomain-like
SMARTSM007175.4E-13111161IPR001005SANT/Myb domain
PfamPF002494.5E-15112159IPR001005SANT/Myb domain
CDDcd001672.46E-10114159No hitNo description
PROSITE profilePS5129426.742160214IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-25163214IPR009057Homeodomain-like
SMARTSM007171.8E-15164212IPR001005SANT/Myb domain
PfamPF002497.1E-15165210IPR001005SANT/Myb domain
CDDcd001675.40E-11167210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGQRMHERHM RIKKSNVGPL QDLAITNKQY LFMLTRMTKM GSYQSTIKEA NTFFETAGDV  60
DSFYXAITPR SNNSSHDEFL PTFSVPRVDE ISAQELYRRM RKPCCDKQDT NKGAWSKQED  120
LKLIDYIRKH GEGCWRTLPQ AAGLLRCGKS CRLRWINYLR PDLKRGNFAE DEEDLIVKLH  180
ALLGNRWSLI AGRLPGRTDN EVKNYWNSHL RRKLMSMGID PNNHRPNNVN LSRLHHQNSQ  240
TVSSTATLSA ALKNPSNYQQ QARSSGNNSC DQKSDGTSCL EDDSCGRLPD LNLDLTITAP  300
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-281092144108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.158760.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1268570.0KJ126857.1 Malus hybrid cultivar MYB2 (MYB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017192216.11e-149transcription repressor MYB6-like
SwissprotQ388512e-77MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A498IAH41e-148A0A498IAH4_MALDO; Uncharacterized protein
STRINGXP_009357784.11e-142(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.19e-80myb domain protein 6