PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000251332
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bZIP
Protein Properties Length: 387aa    MW: 40625.3 Da    PI: 6.059
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000251332genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_176.43.6e-24294356163
                    XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    e+elkr++ kq+NRe+ArrsR+RK+ae+eeL+ +v++L++eN+ L++el +l++e++kl+se+
  MDP0000251332 294 ERELKRQKXKQSNRESARRSRLRKQAECEELQARVEVLSNENHGLREELHRLSEECEKLTSEN 356
                    89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.2E-3146133IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.1E-10155266No hitNo description
Gene3DG3DSA:1.20.5.1705.0E-20288353No hitNo description
PfamPF001701.3E-21294356IPR004827Basic-leucine zipper domain
SMARTSM003386.0E-21294358IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.633296359IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.52E-11297353No hitNo description
CDDcd147024.17E-24299349No hitNo description
PROSITE patternPS000360301316IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MALHYPSQVS GNTWGSTVPF SLVAPIDQFV KGHGQPSLFG DNWEEGTPPK PSKQASTAQE  60
IPTPPSYPDW SSSMQAYYGP GGTPPPFFAS TVASPTPHPY MWGAQHPMMP PYGTPVPYPA  120
MYPPGGVYAH PSMVTTPGAP QPAPELEGKG SDGKERASTK KTKGTAGNAS LAGGKAVESG  180
KATSGSGNDG ASQSGESGSE GSSDGSDDNA NHQEYGTNKK GSFDKMLADG ANAQNSTGAI  240
QASVPGKPVS MPGTNLNIGM DLWNASPAGA GAAKVRGNPS GAPSAGGEHW IQDERELKRQ  300
KXKQSNRESA RRSRLRKQAE CEELQARVEV LSNENHGLRE ELHRLSEECE KLTSENTNIK  360
EELTRVCGPD LVANLEQQPG GGEGKNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310316RRSRLRK
2310317RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.267860.0bud| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in both light and dark grown leaves.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315805.10.0G-box-binding factor 1-like
SwissprotP427741e-120GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A498KG460.0A0A498KG46_MALDO; Uncharacterized protein
TrEMBLD9ZIR00.0D9ZIR0_MALDO; BZIP domain class transcription factor
STRINGXP_008363114.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59333450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-107G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]