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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | MDP0000252038 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family | Dof | ||||||||
| Protein Properties | Length: 328aa MW: 36864.4 Da PI: 10.8075 | ||||||||
| Description | Dof family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-Dof | 38.1 | 3.3e-12 | 269 | 314 | 3 | 48 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrn 48
+k+l+cprC+s nt+f + +l + + +C+ C+r W GG lr
MDP0000252038 269 KKILPCPRCESLNTRFEQFKYSNLRKEKRLCRDCKRSWIVGGKLRR 314
68899***************************************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF02701 | 1.3E-11 | 270 | 314 | IPR003851 | Zinc finger, Dof-type |
| ProDom | PD007478 | 2.0E-7 | 272 | 314 | IPR003851 | Zinc finger, Dof-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 328 aa Download sequence Send to blast |
MASSLLHVLV ILLGFSQLIF LNAIPATRIG SLKLGPQLHQ IAGSNKLVLL HIFDIIVLRD 60 SRGSSRDLNR HVTTEKIYNE RAISERMGVE LNDYPGSGAN NRHTPKPVTK SIALVRKLAG 120 QVLISLPPAL LKLGASLYVL SWQFAAIEFV AENKSRAARI LRTCSNFWKT GRILCDIFDR 180 LCFCSSITLA FSGFFLIHFA SKCVGNLVEL ERIKEGNKVL VRDRDMQRRV AEKKPEIQKK 240 DMRVEACISK PALQPSADEL ARAKAEARKK ILPCPRCESL NTRFEQFKYS NLRKEKRLCR 300 DCKRSWIVGG KLRRGGVNNS LKLGLVSL |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G69570.1 | 1e-09 | Dof family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | MDP0000252038 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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