PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000252727
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 817aa    MW: 91161 Da    PI: 8.0908
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000252727genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.42.2e-121288183
                   EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS
             B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83
                   ffkvl     ++++ l++p  f+++  g++     +  l+ +sg++W v+l  + + ++ ++ ++GW++Fvk++ L++gDf+  +
  MDP0000252727 12 FFKVL--LGDFSKH-LRIPHAFLKNLsGLS-L--GKCALKGPSGKRWIVEL--EERENGlFFYAAGWQDFVKDHLLQVGDFLDVE 88
                   77888..7788888.********7775443.3..379**************..777777788899****************8655 PP
2B350.24.7e-161772601298
                    HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                    +  +lv+pkk a + g+ + +  t +l++esgr W  k+i r ks+   + lt+GW  F+ an++ +gD+v+F+++++s     ++vfr
  MDP0000252727 177 E-YCLVIPKKLAISEGLMSMG--TXMLRNESGRXWCAKVILRPKSSFhrMELTTGWAXFCXANQISVGDTVIFEFVKQSVI--QIHVFR 260
                    3.45********999888555..8*****************999988667889*********************9875554..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-13785IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-13885IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.429104IPR003340B3 DNA binding domain
CDDcd100171.55E-131185No hitNo description
PfamPF023623.0E-101288IPR003340B3 DNA binding domain
SMARTSM010191.5E-41294IPR003340B3 DNA binding domain
SuperFamilySSF1019361.18E-17161260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-18161261IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.196165262IPR003340B3 DNA binding domain
CDDcd100178.61E-14166260No hitNo description
SMARTSM010197.6E-9168262IPR003340B3 DNA binding domain
PfamPF023623.9E-13177261IPR003340B3 DNA binding domain
SuperFamilySSF565742.49E-94420814IPR023796Serpin domain
PfamPF000792.8E-88437814IPR023796Serpin domain
Gene3DG3DSA:3.30.497.101.9E-57438602No hitNo description
SMARTSM000932.8E-72443814IPR023796Serpin domain
Gene3DG3DSA:2.30.39.104.0E-35603708No hitNo description
Gene3DG3DSA:3.30.497.101.9E-57709761No hitNo description
Gene3DG3DSA:2.30.39.104.0E-35762814No hitNo description
PROSITE patternPS002840787797IPR023795Serpin, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MARKGPRKKQ SFFKVLLGDF SKHLRIPHAF LKNLSGLSLG KCALKGPSGK RWIVELEERE  60
NGLFFYAAGW QDFVKDHLLQ VGDFLDVEEA NGKSSNPVSL ENYKGNQARV KEEIVESEAE  120
NYDTDCENKA TIANTRSGNA MSGKRPTTGY VKETSSTCFT FKSENPCFME TLKKHQEYCL  180
VIPKKLAISE GLMSMGTXML RNESGRXWCA KVILRPKSSF HRMELTTGWA XFCXANQISV  240
GDTVIFEFVK QSVIQIHVFR AVRGKRGVCL YDLGLFLANW FYANFIAANL EXLNYATLST  300
FNSETYRAPA ASDNVRISIF VVPLQNVLVP LQNIFVPLQN GVVDPRLWEA IVDPSLLHSL  360
DPGFSIRLHI IVSNSAATAX DIVASACWRL CTSASIFYAS RANALPXLLS DGSRCSSPFR  420
SPRWRYSSMS TKETISNVND VSLEITKQLL TTEGKXXNMV FSPLSIQVVL WLLTAGSKGP  480
TREQLLAFLR SKSTDQLNSL ASHLVPLIFT DGSTKGGPCL SFANGLWVKD XIPIIPSFKE  540
VVDTAYKAAI KHVSFVNPEE VRREVNLWAE KATKGLITEA LSPGXIDHTT TLILSNALYF  600
KGLXSRKFDA SRTITDNFHL LNGTSVXAPF MRSSGEHFVR AFDGFKVLKL PYSQGEDKER  660
QFSMYLLLPD EKYGLPALVE RVCSEPGFLD RHXPRRRXPV GEFKIPRFKI TSGFTASEIL  720
MDLGLVLPFN GXGDLTEMLE SGXXXAKMIH KSFIEVDEDG TKAAAASVYY TLMCSAGPVE  780
RIEEIDFVAD HPFLLLIREE TTGTVMFIGH VLNPLEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3le2_A1e-1264278151392Serpin-ZX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3829422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.16e-16B3 family protein