PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000253886
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 422aa    MW: 45294.1 Da    PI: 6.4055
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000253886genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.6e-184491148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed+ lv++v+++G g+W+++ r  g++R++k+c++rw ++l
    MDP0000253886 44 KGPWTAAEDQVLVEYVRKHGEGNWNSVQRNSGLNRCGKSCRLRWANHL 91
                     79******************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.213995IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-214290IPR009057Homeodomain-like
SMARTSM007172.2E-154393IPR001005SANT/Myb domain
PfamPF002497.7E-164491IPR001005SANT/Myb domain
SuperFamilySSF466892.81E-2145114IPR009057Homeodomain-like
CDDcd001677.96E-124691No hitNo description
Gene3DG3DSA:1.10.10.601.1E-591114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MTPNSNDGIN INGCSVLQSQ ELLESRGGDG GGGLVVVGSK GLKKGPWTAA EDQVLVEYVR  60
KHGEGNWNSV QRNSGLNRCG KSCRLRWANH LRPNLKKGSF SPDEERLILE LHANPTQTHH  120
HPHIPPLSPT PPSLSPLSSP HQPKPTSATS LPLFDPTATA STPSFTFHRP APILGAPLSH  180
KRYRDSVGYS PPISPAPQRI TSILRTIPEN FNNPFPPMSR TQFEYSDGLL SPSGSVYSVK  240
SELPSNQVSQ THSEVTIEAK VSSTVAAVSA ADENNGLLEN LLQEAEALAR GGSGGGGNNN  300
SRVRGNGMLG SFDEKQVSDG YGRWLQSTTS MGSSLFEAKP IHDDHLNSMP EDLSKLFSFI  360
PSTEPVSDWY SDSGELSNGH SSGLTDTSLD FDMQHMASLF PVTATGEHGR ASSSWDNLPG  420
IC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-1638112174B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008385966.20.0transcription factor MYB101-like
TrEMBLA0A498INQ00.0A0A498INQ0_MALDO; Uncharacterized protein
STRINGXP_008385966.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.12e-35myb domain protein 101