PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000253904
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 197aa    MW: 22328.1 Da    PI: 9.7766
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000253904genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.6e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+++ + +G ++Wkt+a+  g++R++k+c++rw++yl
    MDP0000253904 15 KGAWTAEEDRKLAEYTEIHGAKRWKTVASIAGLNRCGKSCRLRWLNYL 62
                     79********************************************97 PP
2Myb_DNA-binding51.81.8e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
    MDP0000253904  68 RGNISDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 113
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3791062IPR017930Myb domain
SMARTSM007172.6E-151464IPR001005SANT/Myb domain
SuperFamilySSF466895.19E-2914109IPR009057Homeodomain-like
PfamPF002495.8E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-241669IPR009057Homeodomain-like
CDDcd001678.49E-111762No hitNo description
PROSITE profilePS5129425.69163117IPR017930Myb domain
SMARTSM007171.2E-1567115IPR001005SANT/Myb domain
PfamPF002499.2E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2570117IPR009057Homeodomain-like
CDDcd001671.38E-1072113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MARKNDGSAK KVMNKGAWTA EEDRKLAEYT EIHGAKRWKT VASIAGLNRC GKSCRLRWLN  60
YLRPNIKRGN ISDDEEDLII RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKKMSQK  120
EKKPQTSTAQ DTTTKSATAT ATKPSHKASD DCADTNFDVN EFFDFSAEGS YGLEWVNKFL  180
ELDENTTAKQ EKVSSIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-291311725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017187456.21e-145transcription factor MYB114-like
SwissprotP102901e-52MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A498K4Q91e-144A0A498K4Q9_MALDO; Uncharacterized protein
STRINGXP_008369484.11e-145(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.17e-53myb domain protein 66
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]