PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000254345
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 869aa    MW: 98337.3 Da    PI: 9.7848
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000254345genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-101566348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                      W t+E++ll++av+++G+ +W+++a ++         +t+  ck ++++++
    MDP0000254345 15 TWGTWEELLLACAVHRFGTQSWDSVATELRkrssnlHLLTPHACKRKFHDLR 66
                     7*****************************9999997799999999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002494.3E-101565IPR001005SANT/Myb domain
CDDcd001671.31E-41565No hitNo description
SMARTSM002970.00186378IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.3E-11303387IPR001487Bromodomain
CDDcd043698.12E-10303373No hitNo description
SuperFamilySSF473701.57E-11303382IPR001487Bromodomain
PfamPF004391.2E-6304363IPR001487Bromodomain
PROSITE profilePS500149.711305359IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MDNKSPKFPE KQTPTWGTWE ELLLACAVHR FGTQSWDSVA TELRKRSSNL HLLTPHACKR  60
KFHDLRRHFN HSDNVSAASN DDKSPIPWLH QLRQRRLDEL RRELQRYDRS IVCLQSKVER  120
LKEVREHSLR ETQKPVEKSD LEKTGDEEIK PDDVSPEKKE ISSDFLVHDG QSFDESNTTD  180
RKPEEPGTGY AGTGNGSEPN KSVEPAGEEI GSAEKSSNPA VEDSCNGSSD SVAKEPAGME  240
SESQVNRSRR MNLPPRRGSQ LNLSRWWISS RSYALISLPP YSGAGSIPRR WRHVNTGLMA  300
VTDNPIYTKM IRQXVDFEMV QTRLEGGWYS HCSRMLFFRD LLIICNNAIV FFGKMSPEYK  360
AACELRSLLS KEMARLAPKQ DAPPEEEILT QPAPPLNPDP ETSDSLLAKS KLSLPLNACR  420
KRSSIAARGS TSSSGPDTRK EQATRDVKPA VNWKQKEVSL DEIEKLRVTK KRRKERLGSS  480
TRNNTSKNVR TRSYXNNDRS SDANENSEXK SETEKKSRVV SSNENSETKA EMEKKRNNNA  540
SGKKQSATNF LSRMKSSSSK TGSLLETSKN PENNSKGRRA EQRKNGNGKG NTQKDQGSRR  600
SSGGRQAAKE QESPSKRSVG RPXKRAAAVA PTTAASSWQT NQLNSKRYRS KLXFLNDMLI  660
IECINYENCY QHSKEEFAXE EVEDGLLERY XNDGNDLRSS FALVILIIIQ FMIAFDALDV  720
EIIDQVLIFN WSCLNFRDVY DLVKVEIKML MRVLSSPALP APRTGWMXQF HEGKPRASAW  780
CXKVHXSNSY SSNYCNSVQQ SLRVQKAYXV DXITACVPAA FKADQPKIIP LWTQSLYRDA  840
FNNATCSRXY PSIDRLCRNV CSPSALKKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1469473KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008366631.20.0uncharacterized protein LOC103430277
TrEMBLA0A498IDU10.0A0A498IDU1_MALDO; Uncharacterized protein
STRINGXP_008350276.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.17e-46DNA-binding bromodomain-containing protein